Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31769
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021471-1|CAA16295.1|  241|Caenorhabditis elegans Hypothetical ...    31   0.49 
Z70208-8|CAA94143.1|  196|Caenorhabditis elegans Hypothetical pr...    28   3.4  

>AL021471-1|CAA16295.1|  241|Caenorhabditis elegans Hypothetical
           protein Y17D7C.1 protein.
          Length = 241

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
 Frame = -1

Query: 225 WFTCHIT-TNSVCWGVFRKRADVIAVTATIVRSRINNRPLNTP-----VNFPTSNNSSF 67
           W +CH   TNSVC+ +FR++ +   +    V+    +  L  P     +N PT NN+ +
Sbjct: 131 WNSCHRPLTNSVCFTIFREKRESERLGYKPVKMSYIDTSLVEPLKKLEINLPTGNNNGY 189


>Z70208-8|CAA94143.1|  196|Caenorhabditis elegans Hypothetical
           protein F54B11.8 protein.
          Length = 196

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -3

Query: 499 FRNFDTFDIKTKLSTRRSKIFDHLSPDD*YTIYTKSLMYSIVRCENSSRLRY 344
           ++NFD+F I    +  R++   ++  D   T+Y+       V CE   + R+
Sbjct: 36  WKNFDSFKIAILNAAARARATGNIRYDSRMTVYSHPATLQCVDCEEGVKKRF 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,958,472
Number of Sequences: 27780
Number of extensions: 211503
Number of successful extensions: 465
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)