Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31769
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29470.1 68414.m03605 dehydration-responsive protein-related ...    28   3.2  
At3g23130.1 68416.m02915 superman protein (SUP) / zinc finger (C...    28   4.3  
At4g33280.1 68417.m04735 transcriptional factor B3 family protei...    27   7.5  
At1g65110.1 68414.m07381 ubiquitin carboxyl-terminal hydrolase-r...    27   7.5  
At4g23290.2 68417.m03357 protein kinase family protein contains ...    27   9.9  
At4g23290.1 68417.m03356 protein kinase family protein contains ...    27   9.9  

>At1g29470.1 68414.m03605 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 770

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 276 PQGLGRSIKWVLERLLIWFT 217
           P+G  RSIKW   R  IW+T
Sbjct: 289 PEGYKRSIKWPKSREKIWYT 308


>At3g23130.1 68416.m02915 superman protein (SUP) / zinc finger (C2H2
           type) family protein identical to superman protein
           GB:S60325 from [Arabidopsis thaliana]; contains Pfam
           domain, PF00096: Zinc finger, C2H2 type
          Length = 204

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 127 SASNYRSGYRNNIRPFPKHTPTNAVR 204
           S+  YR+G   ++ P  KHTP NA +
Sbjct: 123 SSPRYRAGLIRSLSPKSKHTPENACK 148


>At4g33280.1 68417.m04735 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 461

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = +2

Query: 395 FCVNSILVVRRQVIEDLRASSGELRFNV 478
           +CV ++L+ R++V+  +  +  E++FN+
Sbjct: 368 WCVKNMLITRQEVVMQVDQTKWEMKFNI 395


>At1g65110.1 68414.m07381 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1094

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 152 TAITSARFLNTPQQTLFVVI*HVNQINNLSRTHLIERPNPCGLVSDPT 295
           T  T  R + TPQ   F+    +NQI +L +    ER +   L+S  T
Sbjct: 341 TITTECRLVETPQSICFLECDELNQILDLLKRIKCERDDGTELISMAT 388


>At4g23290.2 68417.m03357 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 690

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 437 EDLRASSGELRFNVKSIK 490
           +DL ASSG LRF+ ++IK
Sbjct: 340 DDLTASSGSLRFDFRAIK 357


>At4g23290.1 68417.m03356 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 600

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 437 EDLRASSGELRFNVKSIK 490
           +DL ASSG LRF+ ++IK
Sbjct: 250 DDLTASSGSLRFDFRAIK 267


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,203,455
Number of Sequences: 28952
Number of extensions: 192572
Number of successful extensions: 436
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)