Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31767
(324 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0310 - 16669565-16669822,16670558-16670794 46 7e-06
03_01_0290 + 2246791-2247027,2248089-2248346 44 4e-05
06_03_0999 - 26752410-26752523,26752601-26752830,26752914-267531... 29 0.63
12_02_1005 + 25235757-25235915,25236258-25236374,25236467-252365... 27 4.5
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853 27 4.5
12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768... 26 5.9
06_03_0872 - 25575201-25575312,25576027-25576133,25577096-255771... 26 5.9
03_01_0320 - 2510907-2512190 26 5.9
02_02_0331 + 9017291-9019084,9019205-9019402,9020014-9020184,902... 26 5.9
02_05_0699 + 31013176-31013345,31013749-31013872,31013950-310140... 26 7.8
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 46.0 bits (104), Expect = 7e-06
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +1
Query: 1 IIPXRINIRVEHVKHSKCRQDF-LKRVKXE*GGY*R*AKVCRQXPSTWKRQPAPPKAAHI 177
II RI++RVEHV+ S+C ++F L+++K + AK + ST KRQP PK +
Sbjct: 84 IIRKRIHVRVEHVQPSRCTEEFRLRKIKND--QLKADAKARGEVIST-KRQPQGPKPGFM 140
Query: 178 VSGTEKPVLLAPIPYEFV 231
V G + PIPY+ V
Sbjct: 141 VEGATLET-VTPIPYDVV 157
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 43.6 bits (98), Expect = 4e-05
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +1
Query: 1 IIPXRINIRVEHVKHSKCRQDF-LKRVKXE*GGY*R*AKVCRQXPSTWKRQPAPPKAAHI 177
II RI++RVEHV+ S+C ++ L+++K + AK + ST KRQP PK +
Sbjct: 84 IIRKRIHVRVEHVQPSRCTEELRLRKIKND--QLKADAKARGEVIST-KRQPEGPKPGFM 140
Query: 178 VSGTEKPVLLAPIPYEFV 231
V G + PIPY+ V
Sbjct: 141 VEGATLET-VTPIPYDVV 157
>06_03_0999 - 26752410-26752523,26752601-26752830,26752914-26753169,
26753763-26753828,26753921-26754046,26754148-26754288,
26754377-26754387,26754523-26754670,26755326-26755454,
26755573-26755710,26755808-26755876,26755955-26756023,
26756565-26756720,26756885-26756985,26757068-26757215,
26757540-26757702,26757833-26757965,26758049-26758226,
26758330-26758572,26758664-26758732,26759063-26759187,
26759727-26759766,26760756-26760812,26762831-26762935
Length = 1004
Score = 29.5 bits (63), Expect = 0.63
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 47 PSADKTSLRESKXNEEATEGKPRSAGKXRQPGRDSQLPLKLPTSSVELR 193
P + K S +K EA++ KP + GK P +DS P PT +L+
Sbjct: 886 PKSIKASPDVNKPQVEASKPKPEANGKDSTPSKDS--PTVTPTIQEDLK 932
>12_02_1005 +
25235757-25235915,25236258-25236374,25236467-25236535,
25237509-25237964
Length = 266
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 130 PSTWKRQPAPPKAAHIVSGTEKPVLLAPIP 219
P ++ PAPP V+G PV +AP+P
Sbjct: 157 PQSYMHPPAPPPP---VAGAAAPVTMAPMP 183
>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
Length = 625
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 224 SYGIGASKTGFSVPLTMWAALGGAG 150
S + AS TGF VP+ + A+G AG
Sbjct: 86 SISLPASPTGFGVPVALPIAVGDAG 110
>12_01_0830 -
7678038-7678444,7678996-7680943,7681231-7681983,
7682701-7682824,7683590-7683723
Length = 1121
Score = 26.2 bits (55), Expect = 5.9
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +2
Query: 14 ASISVLSMSSTPSADKTSLRESKXNEEATEGKPRSAGKXRQPGRDSQLPLKLPTSSVELR 193
AS + LS+S S+ T+L ++ ++ P + + P R S P T + R
Sbjct: 98 ASPNRLSLSPRSSSSNTALTRTRSTNSSSRCSPPLSLQSSTPSRRSPTPPGNKTLTPPRR 157
Query: 194 NPS--YLRLSHTNS 229
+PS R+S T+S
Sbjct: 158 SPSPASRRMSATSS 171
>06_03_0872 -
25575201-25575312,25576027-25576133,25577096-25577166,
25577294-25577391,25577490-25577586,25577834-25577878,
25578269-25578413
Length = 224
Score = 26.2 bits (55), Expect = 5.9
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -2
Query: 188 VPLTMWAALGGAGCLFQVDGXCRQTLAYLQ*PPHSXLTLLRK 63
+P W A G LF + G C + P HS +T+LRK
Sbjct: 27 MPPPSWTAAVVGGFLFLL-GLCHGPALLVDVPRHSNVTVLRK 67
>03_01_0320 - 2510907-2512190
Length = 427
Score = 26.2 bits (55), Expect = 5.9
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +1
Query: 121 RQXPSTWKRQPAPPKAAH 174
R P W PAPPK H
Sbjct: 19 RGKPGCWNTPPAPPKVCH 36
>02_02_0331 +
9017291-9019084,9019205-9019402,9020014-9020184,
9020292-9020435,9020552-9020764,9020859-9021929,
9022365-9022391
Length = 1205
Score = 26.2 bits (55), Expect = 5.9
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 59 KTSLRESKXNEEATEGKPRSAGKXRQPGRD-SQLPLKLPTSSVELRNPS 202
K S+++ + E + K +SAG Q GR+ +PL +P E + P+
Sbjct: 247 KPSVKDESHHNERSTVKKQSAGTEHQDGREMKNIPL-MPKKESEEKMPA 294
>02_05_0699 +
31013176-31013345,31013749-31013872,31013950-31014032,
31014106-31014217,31014297-31014401,31014809-31014859,
31015893-31015979,31016325-31016402,31016477-31016530,
31016608-31016892
Length = 382
Score = 25.8 bits (54), Expect = 7.8
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 23 SVLSMSSTPSADKTSLRESKXNEEATEGK-PRSAGKXRQPGR-DSQLPLKLPTSSVELRN 196
+ L SS+ + KTS +ESK +++ T K +S K + R D P K LR
Sbjct: 307 TTLQRSSSSNKGKTSSKESKSDDDQTVKKEKKSKSKSMEGSRSDDDGPRKEKKPKERLRR 366
Query: 197 PSYLRL 214
+ +
Sbjct: 367 KKWFNI 372
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,696,725
Number of Sequences: 37544
Number of extensions: 158738
Number of successful extensions: 500
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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