Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31767
(324 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal prote... 68 2e-12
Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical pr... 27 3.1
Z70271-3|CAA94234.1| 358|Caenorhabditis elegans Hypothetical pr... 27 3.1
Z81494-4|CAB04050.2| 319|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z71258-1|CAA95780.1| 307|Caenorhabditis elegans Hypothetical pr... 26 5.4
Z68270-11|CAJ90499.1| 394|Caenorhabditis elegans Hypothetical p... 26 5.4
Z36753-17|CAA85342.1| 821|Caenorhabditis elegans Hypothetical p... 25 9.5
U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical pr... 25 9.5
AF240692-1|AAF61239.1| 821|Caenorhabditis elegans LIN-5 protein. 25 9.5
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 25 9.5
>L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 21 protein.
Length = 161
Score = 67.7 bits (158), Expect = 2e-12
Identities = 37/79 (46%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +1
Query: 1 IIPXRINIRVEHVKHSKCRQDFLKRVKXE*GGY*R*AKVCRQXPSTWKRQPAPPKAAH-I 177
I+P RINIR+EH+K SKCR DFL RVK + AK Q KR P P+ AH +
Sbjct: 84 ILPKRINIRIEHIKPSKCRTDFLNRVKSN-DEKRKAAKSAGQPVPALKRLPVAPRGAHTV 142
Query: 178 VSGTEKPVLLAPIPYEFVA 234
+ +P LLAP+ +E VA
Sbjct: 143 TTQNNEPELLAPLRFEIVA 161
>Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical
protein F22D6.10 protein.
Length = 302
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 89 EEATEGKPRSAGKXRQPGRDSQLPLKLPT 175
E+ +G P AG+ QPG D Q + PT
Sbjct: 147 EQGPDGAPGEAGRDGQPGSDGQSGNEGPT 175
>Z70271-3|CAA94234.1| 358|Caenorhabditis elegans Hypothetical
protein W08D2.6 protein.
Length = 358
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 89 EEATEGKPRSAGKXRQPGRDSQ 154
E+ +G P S GK +PGRD++
Sbjct: 300 EQGADGGPGSEGKVGRPGRDAE 321
>Z81494-4|CAB04050.2| 319|Caenorhabditis elegans Hypothetical
protein F02E9.3 protein.
Length = 319
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 32 SMSSTPSADKT-SLRESKXNEEATEGKPRSAGK 127
S SS PS + + +L+ K + ++ EGKP+S+ K
Sbjct: 54 SSSSPPSRNSSLNLKTLKKDRKSKEGKPKSSSK 86
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 130 PSTWKRQPAPPKAAHIVSGTEKPVLL 207
PST R+PA P+ + I+S T K ++
Sbjct: 445 PSTTTRKPANPRRSTIMSATSKVAII 470
>Z71258-1|CAA95780.1| 307|Caenorhabditis elegans Hypothetical
protein C01H6.1 protein.
Length = 307
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 71 RESKXNEEATEGKPRSAGKXRQPGRDSQLPLKLP 172
R + G+P S GK PGRD + + LP
Sbjct: 186 RPGEPGSSGLPGRPGSDGKPGLPGRDGKKGIGLP 219
>Z68270-11|CAJ90499.1| 394|Caenorhabditis elegans Hypothetical
protein ZC410.1b protein.
Length = 394
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 207 CAYPIRIRSVKSNKIFLRTKKKKKNSRGGPVPNSP 311
C I +RS + N R K + NS P NSP
Sbjct: 8 CISTIIVRSKRENFACTRRKDSRNNSDAAPNSNSP 42
>Z36753-17|CAA85342.1| 821|Caenorhabditis elegans Hypothetical
protein T09A5.10 protein.
Length = 821
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 32 SMSSTPSADKTSLRESKXNEEATE-GKPRSAGKXRQP 139
S+ S D++SL+ S E+ + P SAG+ +QP
Sbjct: 718 SICSLDFFDRSSLQRSSMRSESIQLASPSSAGEFKQP 754
>U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical
protein ZK418.6 protein.
Length = 825
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 142 KRQPAPPKAAHIVSGTE 192
+R+PAPPK H+ S E
Sbjct: 464 RRRPAPPKQNHVASPAE 480
>AF240692-1|AAF61239.1| 821|Caenorhabditis elegans LIN-5 protein.
Length = 821
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 32 SMSSTPSADKTSLRESKXNEEATE-GKPRSAGKXRQP 139
S+ S D++SL+ S E+ + P SAG+ +QP
Sbjct: 718 SICSLDFFDRSSLQRSSMRSESIQLASPSSAGEFKQP 754
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 89 EEATEGKPRSAGKXRQPGRDSQ 154
E T+G+P AG+ QPG+ Q
Sbjct: 144 EAGTDGEPGQAGQDGQPGQAGQ 165
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,903,335
Number of Sequences: 27780
Number of extensions: 122603
Number of successful extensions: 524
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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