Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31767
         (324 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi...    46   8e-06
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi...    46   8e-06
At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60...    45   1e-05
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi...    45   1e-05
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ...    27   2.2  
At3g52020.1 68416.m05706 serine carboxypeptidase S10 family prot...    27   3.8  
At1g75680.1 68414.m08792 glycosyl hydrolase family 9 protein sim...    27   3.8  
At1g75010.1 68414.m08709 MORN (Membrane Occupation and Recogniti...    26   6.7  
At1g43780.1 68414.m05043 serine carboxypeptidase S10 family prot...    25   8.8  

>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
           to ribosomal protein L21 (gb|L38826). ESTs
           gb|AA395597,gb|ATTS5197 come from this gene
          Length = 164

 Score = 45.6 bits (103), Expect = 8e-06
 Identities = 31/77 (40%), Positives = 41/77 (53%)
 Frame = +1

Query: 1   IIPXRINIRVEHVKHSKCRQDFLKRVKXE*GGY*R*AKVCRQXPSTWKRQPAPPKAAHIV 180
           II  RI++RVEHV+ S+C ++F  R K         AK   +  ST KRQP  PK   +V
Sbjct: 84  IIRKRIHVRVEHVQQSRCAEEFKLRKKKN-DELKAAAKANGETIST-KRQPKGPKPGFMV 141

Query: 181 SGTEKPVLLAPIPYEFV 231
            G      + PIPY+ V
Sbjct: 142 EGMTLET-VTPIPYDVV 157


>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
           to L21 family of ribosomal protein; amino acid sequence
           is identical to F21M12.8
          Length = 164

 Score = 45.6 bits (103), Expect = 8e-06
 Identities = 31/77 (40%), Positives = 41/77 (53%)
 Frame = +1

Query: 1   IIPXRINIRVEHVKHSKCRQDFLKRVKXE*GGY*R*AKVCRQXPSTWKRQPAPPKAAHIV 180
           II  RI++RVEHV+ S+C ++F  R K         AK   +  ST KRQP  PK   +V
Sbjct: 84  IIRKRIHVRVEHVQQSRCAEEFKLRKKKN-DELKAAAKANGETIST-KRQPKGPKPGFMV 141

Query: 181 SGTEKPVLLAPIPYEFV 231
            G      + PIPY+ V
Sbjct: 142 EGMTLET-VTPIPYDVV 157


>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
           ribosomal protein L21 GI:3885884 from [Oryza sativa]
          Length = 164

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 31/77 (40%), Positives = 42/77 (54%)
 Frame = +1

Query: 1   IIPXRINIRVEHVKHSKCRQDFLKRVKXE*GGY*R*AKVCRQXPSTWKRQPAPPKAAHIV 180
           II  RI++RVEHV+ S+C ++F  R K +       AK   +  ST KRQP  PK   +V
Sbjct: 84  IIRKRIHVRVEHVQQSRCAEEFKLR-KKQNDVLKADAKARGETIST-KRQPKGPKPGFMV 141

Query: 181 SGTEKPVLLAPIPYEFV 231
            G      + PIPY+ V
Sbjct: 142 EGMTLET-VTPIPYDVV 157


>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar
           to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from
           [Arabidopsis thaliana]
          Length = 164

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 31/77 (40%), Positives = 42/77 (54%)
 Frame = +1

Query: 1   IIPXRINIRVEHVKHSKCRQDFLKRVKXE*GGY*R*AKVCRQXPSTWKRQPAPPKAAHIV 180
           II  RI++RVEHV+ S+C ++F  R K +       AK   +  ST KRQP  PK   +V
Sbjct: 84  IIRKRIHVRVEHVQQSRCAEEFKLR-KKQNDVLKADAKARGETIST-KRQPKGPKPGFMV 141

Query: 181 SGTEKPVLLAPIPYEFV 231
            G      + PIPY+ V
Sbjct: 142 EGMTLET-VTPIPYDVV 157


>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
            contains Pfam domain, PF00642: Zinc finger
            C-x8-C-x5-C-x3-H type (and similar)
          Length = 1230

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 23   SVLSMSSTPSADKTSLRESKXNEEATEGKPRSAGKXRQPG--RDSQ 154
            SVL +SS PS    S  +S     +TE  PR +   R  G  RD Q
Sbjct: 1121 SVLGVSSEPSPRSLSSHDSSSARGSTERSPRVSQPKRSSGHSRDRQ 1166


>At3g52020.1 68416.m05706 serine carboxypeptidase S10 family protein
           similar to SP|P52711 Serine carboxypeptidase II-3
           precursor (EC 3.4.16.6) Hordeum vulgare; contains Pfam
           profile PF0450 serine carboxypeptidase
          Length = 501

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 221 YGIGASKTGFSVPLTMWAALGGAGC 147
           Y + A+KT  S+PL +W   GG GC
Sbjct: 111 YFVEATKTKKSLPLVLWLN-GGPGC 134


>At1g75680.1 68414.m08792 glycosyl hydrolase family 9 protein
           similar to endo-beta-1,4-glucanase GB:AAC12685
           GI:3025470 from [Pinus radiata]
          Length = 525

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 255 LRTKKKKKNSRGGPVPNSP 311
           LRTKK   +  GGPVP  P
Sbjct: 33  LRTKKSGDDDGGGPVPGPP 51


>At1g75010.1 68414.m08709 MORN (Membrane Occupation and Recognition
           Nexus) repeat-containing protein
           /phosphatidylinositol-4-phosphate 5-kinase-related low
           similarity to phosphatidylinositol-4-phosphate 5-kinase
           AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
           Pfam profile PF02493: MORN repeat
          Length = 712

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 35  MSSTPSADKTSLRESKXNEEATEGKPRSAGKXRQPGRDSQLPLK 166
           +S   SAD T ++ S  N E  E       +  + G DS+ PLK
Sbjct: 371 VSIKDSADSTDVKTSNQNIEEFEIDSEDLLEVSENGDDSEYPLK 414


>At1g43780.1 68414.m05043 serine carboxypeptidase S10 family protein
           similar to serine carboxylase II-3 GB:CAA55478 GI:474392
           from [Hordeum vulgare]
          Length = 479

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 221 YGIGASKTGFSVPLTMWAALGGAGC 147
           Y + A K   S PLT+W   GG GC
Sbjct: 69  YFVEAEKQPHSKPLTLWLN-GGPGC 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,617,813
Number of Sequences: 28952
Number of extensions: 117047
Number of successful extensions: 372
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)