Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31760
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 298 3e-82
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 166 2e-42
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 154 6e-39
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 115 4e-27
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 92 4e-20
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 85 4e-18
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 82 4e-17
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 46 3e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 31 0.077
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 30 0.24
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 28 0.72
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 3.8
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 6.7
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 25 8.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 298 bits (732), Expect = 3e-82
Identities = 134/155 (86%), Positives = 144/155 (92%)
Frame = +1
Query: 52 DDDVAALVVDNGSGMCKAGFAGDDAPRAXFPXIXGRPRHQGVMVGMGQKDSYVGDEAQSK 231
++++AALV+DNGSGMCKAGFAGDDAPRA FP I GRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 232 RGILTLKYPIEHGIITNWDDMEXIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREXMTX 411
RGILTLKYPIEHGI+ NWDDME IWHHTFYNELRVAPEEHP LLTEAPLNPK+NRE MT
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 412 IMFETFNSPAMYVAIQAVLSLYASGRTTGXVLDSG 516
I+FETFN+PA YVAIQAVLSLYASGRTTG VLDSG
Sbjct: 122 IIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSG 156
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 166 bits (403), Expect = 2e-42
Identities = 79/154 (51%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Frame = +1
Query: 58 DVAALVVDNGSGMCKAGFAGDDAPRAXFPXIXGRPRHQGVMVGMGQKDSYVGDEAQSKRG 237
D + +DNGSG KAGFAGDD P+ FP GR +H+ VM QKD +VG EAQ+ RG
Sbjct: 8 DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRG 67
Query: 238 ILTLKYPIEHGIITNWDDMEXIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREXMTXI 414
+L ++ PIE GII NW DME IW + + + +L PEEHP+LLTE PL N+E +
Sbjct: 68 LLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEY 127
Query: 415 MFETFNSPAMYVAIQAVLSLYASGRTTGXVLDSG 516
+ET N PA+ ++Q VL+LYAS RTTG VL+ G
Sbjct: 128 FYETLNVPALSFSLQPVLALYASARTTGIVLECG 161
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 154 bits (374), Expect = 6e-39
Identities = 74/153 (48%), Positives = 104/153 (67%), Gaps = 2/153 (1%)
Frame = +1
Query: 64 AALVVDNGSGMCKAGFAGDDAPRAXFPXIXGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 237
A +V+DNG+G K G+A D+ PR FP I GRP R + + KD VGDEA++ R
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRS 63
Query: 238 ILTLKYPIEHGIITNWDDMEXIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREXMTXIM 417
+L +KYP+E+GII ++++M +W +TF+ +L++ P +LLTE P+NP ANRE M M
Sbjct: 64 LLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETM 123
Query: 418 FETFNSPAMYVAIQAVLSLYASGRTTGXVLDSG 516
FE + +YVAIQAVLSLYA G ++G V+DSG
Sbjct: 124 FERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSG 156
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 115 bits (277), Expect = 4e-27
Identities = 72/181 (39%), Positives = 94/181 (51%), Gaps = 32/181 (17%)
Frame = +1
Query: 70 LVVDNGSGMCKAGFAGDDAPRAXFPXIXGRPRHQGVMVG---------MGQK-------- 198
+++DNG+G K G+AG+DAP FP + R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 199 ------DSYVGDEAQSKRGI-LTLKYPIEHGIITNWDDMEXIWHHTFYNELRVAPEEHPV 357
D ++G++A K +L YPI HG I NWD ME W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 358 LLTEAPLNPKANREXMTXIMFETFNSPAMYVAIQAVLSLYASGRT--------TGXVLDS 513
LLTE PLNP NRE IMFE+FN +Y+A+QAVL+L AS + TG V+DS
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDS 186
Query: 514 G 516
G
Sbjct: 187 G 187
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 92.3 bits (219), Expect = 4e-20
Identities = 51/154 (33%), Positives = 80/154 (51%)
Frame = +1
Query: 55 DDVAALVVDNGSGMCKAGFAGDDAPRAXFPXIXGRPRHQGVMVGMGQKDSYVGDEAQSKR 234
D+V+A+V+D GS + GF+G+D P+ P G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 235 GILTLKYPIEHGIITNWDDMEXIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREXMTXI 414
G + +K I +G + NWD +W + +L+ P EHP+L+TE NP NR
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 415 MFETFNSPAMYVAIQAVLSLYASGRTTGXVLDSG 516
MFE+ PA Y+A Q + +ASG+ T ++D G
Sbjct: 121 MFESLRCPATYLAKQETCAAFASGKGTACLVDIG 154
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 85.4 bits (202), Expect = 4e-18
Identities = 51/165 (30%), Positives = 89/165 (53%), Gaps = 3/165 (1%)
Frame = +1
Query: 31 TQSSSMCDDDVAALVVDNGSGMCKAGFAGDDAPRAXFPXIXGRPRHQGVMVGMGQKDSYV 210
T S +D+ LV+DNGS +AG+ G+ P+ F + R R + + + + V
Sbjct: 15 TPSFQNVSNDIP-LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLV 69
Query: 211 GDEAQSKRGILTL-KYPIEHGIITNWDDMEXIWHHTFYNELRVAPEEHPVLLTEAPLNPK 387
G++ + G ++ + P E +I+NWD ME + +TF +L + EHP+ +TE NP
Sbjct: 70 GNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPT 128
Query: 388 ANREXMTXIMFETFNSPAMYVAIQAVLSLYASGR--TTGXVLDSG 516
R MT ++FE +N+P++ I + S Y + + ++G VL+ G
Sbjct: 129 YVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLG 173
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 82.2 bits (194), Expect = 4e-17
Identities = 45/156 (28%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
Frame = +1
Query: 55 DDVAALVVDNGSGMCKAGFAGDDAPRAXFPXIXGRPRHQGVMVGMGQKDSYVGDEAQSKR 234
+++ +LV+D GS + G+AG+++P P + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 235 GI--LTLKYPIEHGIITNWDDMEXIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREXMT 408
I + +K +GII +W+ W +L+V P E+ +++TE NP++ R+ +
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121
Query: 409 XIMFETFNSPAMYVAIQAVLSLYASGRTTGXVLDSG 516
FE + PA Y+ QAV +A+ ++T ++D G
Sbjct: 122 EAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIG 157
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 46.0 bits (104), Expect = 3e-06
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Frame = +1
Query: 256 PIEHGIITNWDDMEXIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREXMTXIMFE 423
PI+ G + +W+ ++ W H Y+ L P + +PV L +RE T FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 424 TFNSPAMYVAIQAVLSLYASGRTTGXVLDSG 516
P +A + ++ LYA G G V+D G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIG 202
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 31.5 bits (68), Expect = 0.077
Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 4/146 (2%)
Frame = +1
Query: 70 LVVDNGSGMCKAGFAGDDAPRAXFPXIXGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 249
+V+DNG+ KAGFAG P R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 250 KYPIEH--GIITNWDDMEXIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREXMTXIM 417
++ H G + +W +W N + P ++ +LLT+ + ++
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 418 FETFNSPAMYVAIQAVLSLYASGRTT 495
FE F A A L + G T
Sbjct: 118 FEEFQFDAYLPCTPAELIPWDHGSFT 143
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 29.9 bits (64), Expect = 0.24
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 115 GDDAPRAXFPXIXGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 258
G+ PRA F + P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 28.3 bits (60), Expect = 0.72
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +1
Query: 316 FYNELRVAPEEHPVLLTE--APLNPKANREXMTXIMFETFNSPAM---YVAIQ 459
+Y L E+HP+LLT+ A L P+ + + I ++ N+P + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 3.8
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 311 WCQXFS-MSSQLVMIPCSMGYFRVRIPLLL-WASSPT*ESFWPIPTITPWW 165
WC+ S + SQ+ + +G F PL L WA + + P ITPWW
Sbjct: 304 WCKPSSAVLSQIFGVKTGLGLF----PLTLDWAQISSLSN----PLITPWW 346
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 175 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 261
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 24.6 bits (51), Expect = 8.9
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -1
Query: 279 GDDTVLDGVLQSEDTSLALGLVTHVGVFLAHTDHH 175
GDD+VLD V +D L L AH D H
Sbjct: 676 GDDSVLDTVTAGKDVYAFLNLFFAKFPQYAHLDFH 710
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,770,683
Number of Sequences: 5004
Number of extensions: 31953
Number of successful extensions: 116
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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