Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31760
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 321 2e-88
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 317 4e-87
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 314 3e-86
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 314 3e-86
SB_56| Best HMM Match : Actin (HMM E-Value=0) 312 9e-86
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 177 4e-45
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 148 3e-36
SB_54| Best HMM Match : Actin (HMM E-Value=0) 104 5e-23
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 91 7e-19
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 76 2e-14
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 66 2e-11
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 55 3e-08
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 55 4e-08
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 53 1e-07
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 8e-06
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 44 6e-05
SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_20236| Best HMM Match : Pec_lyase_N (HMM E-Value=6.6) 31 0.56
SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7) 30 0.98
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.98
SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29) 29 3.0
SB_37603| Best HMM Match : Pox_A32 (HMM E-Value=0.0085) 29 3.0
SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9) 29 3.0
SB_15319| Best HMM Match : Transposase_9 (HMM E-Value=3.2) 28 5.3
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_37150| Best HMM Match : 7tm_1 (HMM E-Value=0.011) 27 6.9
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 321 bits (789), Expect = 2e-88
Identities = 148/157 (94%), Positives = 150/157 (95%)
Frame = +1
Query: 46 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAXFPXIXGRPRHQGVMVGMGQKDSYVGDEAQ 225
MCDDDVAALVVDNGSGMCKAGFAGDDAPRA FP I GRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 226 SKRGILTLKYPIEHGIITNWDDMEXIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREXM 405
SKRGILTLKYPIEHGI+TNWDDME IWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE M
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 406 TXIMFETFNSPAMYVAIQAVLSLYASGRTTGXVLDSG 516
T IMFETFNSPAMYVAIQAVLSLYASGRTTG V+DSG
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSG 157
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 317 bits (778), Expect = 4e-87
Identities = 145/157 (92%), Positives = 149/157 (94%)
Frame = +1
Query: 46 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAXFPXIXGRPRHQGVMVGMGQKDSYVGDEAQ 225
M DDD+AALV+DNGSGMCKAGFAGDDAPRA FP I GRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 226 SKRGILTLKYPIEHGIITNWDDMEXIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREXM 405
SKRGILTLKYPIEHGI+TNWDDME IWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE M
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 406 TXIMFETFNSPAMYVAIQAVLSLYASGRTTGXVLDSG 516
T IMFETFNSPAMYVAIQAVLSLYASGRTTG V+DSG
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSG 157
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 314 bits (771), Expect = 3e-86
Identities = 145/157 (92%), Positives = 149/157 (94%)
Frame = +1
Query: 46 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAXFPXIXGRPRHQGVMVGMGQKDSYVGDEAQ 225
M DD++AALVVDNGSGMCKAGFAGDDAPRA FP I GRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 226 SKRGILTLKYPIEHGIITNWDDMEXIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREXM 405
SKRGILTLKYPIEHGI+TNWDDME IWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE M
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 406 TXIMFETFNSPAMYVAIQAVLSLYASGRTTGXVLDSG 516
T IMFETFNSPAMYVAIQAVLSLYASGRTTG V+DSG
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSG 157
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 314 bits (771), Expect = 3e-86
Identities = 145/155 (93%), Positives = 148/155 (95%)
Frame = +1
Query: 52 DDDVAALVVDNGSGMCKAGFAGDDAPRAXFPXIXGRPRHQGVMVGMGQKDSYVGDEAQSK 231
+DDVAALVVDNGSGMCKAGFAGDDAPRA FP I GRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 232 RGILTLKYPIEHGIITNWDDMEXIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREXMTX 411
RGILTLKYPIEHGI+TNWDDME IWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE MT
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 412 IMFETFNSPAMYVAIQAVLSLYASGRTTGXVLDSG 516
IMFETFNSPAMYVAIQAVLSLYASGRTTG V+DSG
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSG 156
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 312 bits (767), Expect = 9e-86
Identities = 144/155 (92%), Positives = 148/155 (95%)
Frame = +1
Query: 52 DDDVAALVVDNGSGMCKAGFAGDDAPRAXFPXIXGRPRHQGVMVGMGQKDSYVGDEAQSK 231
+D+VAALVVDNGSGMCKAGFAGDDAPRA FP I GRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 232 RGILTLKYPIEHGIITNWDDMEXIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREXMTX 411
RGILTLKYPIEHGI+TNWDDME IWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE MT
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 412 IMFETFNSPAMYVAIQAVLSLYASGRTTGXVLDSG 516
IMFETFNSPAMYVAIQAVLSLYASGRTTG V+DSG
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSG 156
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 177 bits (431), Expect = 4e-45
Identities = 80/89 (89%), Positives = 82/89 (92%)
Frame = +1
Query: 52 DDDVAALVVDNGSGMCKAGFAGDDAPRAXFPXIXGRPRHQGVMVGMGQKDSYVGDEAQSK 231
DDDVAALV+DNGSGMCKAGFAGDDAPRA FP I GRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 232 RGILTLKYPIEHGIITNWDDMEXIWHHTF 318
RGILTLKYPIEHGI+TNWDDME I TF
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 72.9 bits (171), Expect = 1e-13
Identities = 35/42 (83%), Positives = 37/42 (88%)
Frame = +1
Query: 391 NREXMTXIMFETFNSPAMYVAIQAVLSLYASGRTTGXVLDSG 516
N + M IMFETFNSPAMYVAIQAVLSLYASGRTTG V+DSG
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSG 119
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 148 bits (358), Expect = 3e-36
Identities = 71/154 (46%), Positives = 98/154 (63%), Gaps = 3/154 (1%)
Frame = +1
Query: 64 AALVVDNGSGMCKAGFAGDDAPRAXFPXIXGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 237
+ +V DNG+G K G+AG + P FP + GRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 238 ILTLKYPIEHGIITNWDDMEXIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREXMTXI 414
+L + YP+++GI+ NWDDM+ +W +TF +++ + P VLLTE PLNP NRE M +
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEV 126
Query: 415 MFETFNSPAMYVAIQAVLSLYASGRTTGXVLDSG 516
MFE + +Y+AIQAVL+LYA G TG V+DSG
Sbjct: 127 MFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSG 160
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 104 bits (249), Expect = 5e-23
Identities = 48/72 (66%), Positives = 57/72 (79%)
Frame = +1
Query: 301 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREXMTXIMFETFNSPAMYVAIQAVLSLYA 480
+W H F ++LRV E+ PVLLTEAPLNPK NRE M +MFE+FN P MYVA+QAV++LYA
Sbjct: 2131 MWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALYA 2189
Query: 481 SGRTTGXVLDSG 516
SGRTTG V D G
Sbjct: 2190 SGRTTGTVFDCG 2201
Score = 54.8 bits (126), Expect = 4e-08
Identities = 21/34 (61%), Positives = 27/34 (79%)
Frame = +1
Query: 70 LVVDNGSGMCKAGFAGDDAPRAXFPXIXGRPRHQ 171
+V+DNGSG CKAG + D++PR FP I GRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 90.6 bits (215), Expect = 7e-19
Identities = 39/57 (68%), Positives = 49/57 (85%)
Frame = +1
Query: 346 EHPVLLTEAPLNPKANREXMTXIMFETFNSPAMYVAIQAVLSLYASGRTTGXVLDSG 516
+HPVLLTEAPLNP+ NRE + FETFN PA+++++QAVLSLYA+GRTTG VLD+G
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAG 182
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 76.2 bits (179), Expect = 2e-14
Identities = 33/87 (37%), Positives = 55/87 (63%)
Frame = +1
Query: 256 PIEHGIITNWDDMEXIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREXMTXIMFETFNS 435
PI+ G+I +WD E I + + ++ HP+L++EA N + RE +T +MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 436 PAMYVAIQAVLSLYASGRTTGXVLDSG 516
PA ++ +VL+ +A+GR+ G V+DSG
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVIDSG 89
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 65.7 bits (153), Expect = 2e-11
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +1
Query: 412 IMFETFNSPAMYVAIQAVLSLYASGRTTGXVLDSG 516
IMFE FNSPA+YVAIQAVLSLYASGRTTG V DSG
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSG 35
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/34 (70%), Positives = 26/34 (76%)
Frame = +1
Query: 70 LVVDNGSGMCKAGFAGDDAPRAXFPXIXGRPRHQ 171
LV+D GS M K GFAGDDAP+ FP I GRPRHQ
Sbjct: 1359 LVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 54.8 bits (126), Expect = 4e-08
Identities = 25/60 (41%), Positives = 33/60 (55%)
Frame = +1
Query: 184 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEXIWHHTFYNELRVAPEEHPVLL 363
G+ D ++GDEA K T K+PI H I+ +WD ME W + LR PE+H LL
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 53.2 bits (122), Expect = 1e-07
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Frame = +1
Query: 7 TSVPQHKHTQSSSMCDDDV-AALVVDNGSGMCKAGFAGDDAPRAXFPXIXGRPRHQGVMV 183
T +P+ K + S D A+V+DNG G+ K GFAGD PR P + G P+ +++
Sbjct: 681 TVIPRTKKRRYSFKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLI 740
Query: 184 G--MGQKD-SYVGDEAQSKRGILTL 249
G + KD GD A +K G++ L
Sbjct: 741 GDNVNVKDYKKYGDAAVAKSGVMHL 765
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 47.2 bits (107), Expect = 8e-06
Identities = 20/39 (51%), Positives = 29/39 (74%)
Frame = -1
Query: 168 VARATXDXREXGAGRVVAGETGLAHAGAIVDYKRSNIVV 52
+AR+ D E G+G +V+GETGLAH GAI+D + +I+V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 44.4 bits (100), Expect = 6e-05
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Frame = +1
Query: 61 VAALVVDNGSGMCKAGFAGDDAPRAXFPXIXGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 240
+A LV+D G+ K GFA + APR+ P + + + ++ ++GD+ + +
Sbjct: 233 MATLVLDCGACSQKIGFASNQAPRS-IPNAIFKAKSE-------RRKLFIGDQIEECKDY 284
Query: 241 LTLKY--PIEHGIITNWDDMEXIWHHTFYNE 327
L Y P + G + NWD + IW +TF E
Sbjct: 285 SALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
>SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 739
Score = 32.7 bits (71), Expect = 0.18
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 38 VQACATTMLLRL*STM-APACARPVSPATTRPAPXSR 145
V +C T+L+R T+ APA +P+SPAT P +R
Sbjct: 631 VSSCLATLLVRPLETIPAPAPTKPISPATPASGPPTR 667
>SB_20236| Best HMM Match : Pec_lyase_N (HMM E-Value=6.6)
Length = 697
Score = 31.1 bits (67), Expect = 0.56
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 38 VQACATTMLLR-L*STMAPACARPVSPATTRPAPXSR 145
V +C T+L+R L +T APA P SPAT P R
Sbjct: 20 VSSCLATLLVRPLETTPAPAPTTPTSPATPASGPPIR 56
>SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7)
Length = 682
Score = 30.3 bits (65), Expect = 0.98
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 8 PACPNTNTHKVQACATTMLLRL*STM-APACARPVSPATTRPAPXSR 145
P+C T + +C T+L+R T+ APA P SPAT P R
Sbjct: 102 PSCRALET-SLSSCLATLLVRPLETIPAPAPTTPTSPATPASGPPIR 147
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 30.3 bits (65), Expect = 0.98
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 247 LKYPIEHGIITNWDDMEXIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANRE 399
L+ P + ++T+++ E + H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1077
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 31 TQSSSMCDDDVAALVVDNG-SGMCKAGFAGD 120
T+ S +CD D + +N MCKAG+ GD
Sbjct: 483 TRPSRLCDKDAVCRLENNAIKCMCKAGYTGD 513
>SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 38 VQACATTMLLRL*STM-APACARPVSPATTRPAPXSR 145
V +C T+L+R T+ APA P SPAT P R
Sbjct: 71 VSSCLATLLVRPLETIPAPAPTTPTSPATPASGPPIR 107
>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
Length = 1851
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 38 VQACATTMLLR-L*STMAPACARPVSPAT 121
V +C T+L+R L +T APA P SPAT
Sbjct: 20 VSSCLATLLVRPLETTPAPAPTTPTSPAT 48
>SB_37603| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)
Length = 1411
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 38 VQACATTMLLR-L*STMAPACARPVSPAT 121
V +C T+L+R L +T APA P SPAT
Sbjct: 20 VSSCLATLLVRPLETTPAPAPTTPTSPAT 48
>SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9)
Length = 461
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 38 VQACATTMLLR-L*STMAPACARPVSPAT 121
V +C T+L+R L +T APA P SPAT
Sbjct: 13 VSSCLATLLVRPLETTPAPAPTTPTSPAT 41
>SB_15319| Best HMM Match : Transposase_9 (HMM E-Value=3.2)
Length = 782
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 38 VQACATTMLLRL*STM-APACARPVSPATTRPAPXSR 145
V +C T+++R T+ APA P SPAT P R
Sbjct: 50 VSSCLATLVVRPLETIPAPAPTTPTSPATPASGPPIR 86
>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2541
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 38 VQACATTMLLR-L*STMAPACARPVSPAT 121
V +C T L+R L +T APA P SPAT
Sbjct: 522 VSSCLATFLVRTLETTPAPAPTTPTSPAT 550
>SB_37150| Best HMM Match : 7tm_1 (HMM E-Value=0.011)
Length = 211
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 38 VQACATTMLLR-L*STMAPACARPVSPATTRPAPXSR 145
V +C T+L+R L + APA P SPAT A R
Sbjct: 147 VSSCLATLLVRPLETAPAPAPTTPTSPATPASAAPIR 183
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.133 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,436,502
Number of Sequences: 59808
Number of extensions: 286613
Number of successful extensions: 899
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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