Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31758
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965           30   0.96 
08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617     29   1.7  
12_01_0378 - 2946916-2947590                                           27   8.9  
05_06_0206 + 26369089-26369143,26369627-26369733,26369814-263706...    27   8.9  
03_02_0081 - 5506194-5506197,5506310-5507170,5507299-5507456,550...    27   8.9  

>01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965
          Length = 675

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -2

Query: 323 GEDKSELNWETITDDVLGALEPKLIGVLHAVHLVVSYQFVH 201
           GED++ LNWET     LGA      G+ H +H   + +FVH
Sbjct: 462 GEDRTPLNWETRVRIALGAAR----GIAH-IHTENNGKFVH 497


>08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617
          Length = 988

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +3

Query: 87  DILEEQLYNSVVVADY--DSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 260
           DIL E LY S  ++DY  D      ++L +  +   + N++ + ++NN+   +     +W
Sbjct: 237 DILSEVLYTSNPMSDYQKDHFWRIKENLNQPLEDHQLINMIKEYLKNNRYFIV--IDDIW 294

Query: 261 LQGSKDIVRDCFP 299
            + +  +++  FP
Sbjct: 295 SKSAWQVIQCAFP 307


>12_01_0378 - 2946916-2947590
          Length = 224

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 18  KPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYD 137
           +P +++L    ASL AA++ VP    + ++  +VV  D+D
Sbjct: 94  RPRLLLLLAGGASLGAANATVPGVFHQPRMSTTVVAIDFD 133


>05_06_0206 +
           26369089-26369143,26369627-26369733,26369814-26370647,
           26370781-26370939,26371070-26371410,26373894-26373991,
           26374244-26374350,26374715-26375266,26375366-26375524,
           26375631-26376005
          Length = 928

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/65 (23%), Positives = 28/65 (43%)
 Frame = +3

Query: 198 VVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGLALTLS 377
           +V K+      N  EY      Q  + ++  CF  E  +++   ++  + KR+G      
Sbjct: 490 IVGKVPSTVSFNETEYYTAAPRQKEEGVLYCCFGTELEVLYYYESVASLAKRNGSPCQQG 549

Query: 378 NDVQG 392
           +D QG
Sbjct: 550 DDYQG 554


>03_02_0081 -
           5506194-5506197,5506310-5507170,5507299-5507456,
           5507549-5507740
          Length = 404

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +3

Query: 393 DDGRPAYGD--GKDK--TSPRVSWKLIALWENNKVY 488
           DDGR  +G+  G ++   SP  SW L +LW+   V+
Sbjct: 233 DDGRWRHGEWRGAERFLASPPASWALASLWDCGGVF 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,529,365
Number of Sequences: 37544
Number of extensions: 204907
Number of successful extensions: 756
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)