Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31758
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_35002| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)                     27   6.9  
SB_35038| Best HMM Match : Ras (HMM E-Value=6.8e-13)                   27   6.9  
SB_5215| Best HMM Match : DUF745 (HMM E-Value=1.6)                     27   6.9  

>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +1

Query: 67  QIPTSLTTFWRSSFTIASSLPITTVRLKRASIYTRRRRAKSSQM 198
           +IPTS     R SFTI   +P + VR  R S +T  RR  +S++
Sbjct: 403 RIPTSRVRQTRLSFTIVRRIPTSRVRQTRLS-FTMIRRIPASRV 445



 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 67  QIPTSLTTFWRSSFTIASSLPITTVRLKRASIYTRRRRAKSSQM 198
           +IPTS     R SFT+   +P + VR  R S +T  RR  +S++
Sbjct: 146 RIPTSRVRQTRLSFTMVRRIPTSRVRQTRLS-FTMVRRIPTSRV 188


>SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1498

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 24/108 (22%), Positives = 46/108 (42%)
 Frame = +3

Query: 93   LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGS 272
            L   L N +  A   +A  +   L++E K ++++NVV + +    +   + A++ W Q  
Sbjct: 810  LNRLLRNEISNAQGPNAAGQKNFLFQEVK-DILSNVVQRNMVRESLQAKKDAFESWRQVI 868

Query: 273  KDIVRDCFPVEFRLIFAENAIKLMYKRDGLALTLSNDVQGDDGRPAYG 416
            +  +  C P +  L   + A+ L   +D L      D   +   P  G
Sbjct: 869  EVALATC-PGDILLQDVKQAVILETLQDLLMKIAQEDALQELTSPVSG 915


>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -2

Query: 353 ALVHKLNRVFGEDKSELNWETITDDVLGALEPKLIGVLHAVHL 225
           ++V +  +  G D SE  ++  T +VL ALE + + + H VH+
Sbjct: 94  SVVRQCIKDIGYDDSEKGFDYKTCNVLVALEQQSVDIAHGVHV 136


>SB_35002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 907

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 22/111 (19%), Positives = 45/111 (40%)
 Frame = +3

Query: 9   SKXKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV 188
           S+   +++I C F      A S V      E +Y     A   S   K+K     ++   
Sbjct: 667 SQLAGSLMIACKFAFPFIVA-SHVTRSF--ENMYKRFNHAQMTSQRVKNKKFAMRRRRTT 723

Query: 189 ITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKL 341
           +  + +   R   +   +Y + +  Q + D +    P E R+ F+E ++++
Sbjct: 724 VKMLQSSFWRARMLTPSDYKFLIEHQWNGDAITYTSPAEVRMAFSEGSVRV 774


>SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 207 KLIRNNKMNCMEYAYQLWLQGSKDIVRDCF 296
           +L  NN+M    +A+  WL+G +   R C+
Sbjct: 17  RLHNNNRMLICTFAHSTWLKGRQGSSRQCY 46


>SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)
          Length = 720

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = -3

Query: 358 PSRLYISLIAFSAKISLNSTGKQSRTMSLEPWSQS**AYSMQFILLFRISLFTTFVMTSL 179
           P   Y        K+  +  G  S+   L  W +   A S+++ LL     F T VM S 
Sbjct: 209 PKHAYFRQTEGKGKMFADCYGHSSKVNEL--WKKISPASSLEYELLLCNETFITGVMISK 266

Query: 178 FFSSYK 161
           F +SYK
Sbjct: 267 FHTSYK 272


>SB_35038| Best HMM Match : Ras (HMM E-Value=6.8e-13)
          Length = 322

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
 Frame = +3

Query: 174 KKSEVITNVVNKLIRNNKMNCME------YAYQLWLQGSKDIVRD 290
           KK +   ++V  L + NK N +E         Q  LQGSKDIVR+
Sbjct: 207 KKKKAAISLVESLFQENKPNPIEEECENFLKEQSGLQGSKDIVRN 251


>SB_5215| Best HMM Match : DUF745 (HMM E-Value=1.6)
          Length = 171

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = +3

Query: 99  EQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKD 278
           ++L  S + A  D A+EK KHL +    +++T    ++I+  ++  +E    +  Q SKD
Sbjct: 65  KELATSAISAAKDLAIEKGKHLIDRTSVKMLTPKNVEVIK--QITGLEPNTPVITQKSKD 122

Query: 279 IV 284
           I+
Sbjct: 123 IL 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,436,814
Number of Sequences: 59808
Number of extensions: 242818
Number of successful extensions: 841
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)