Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31758
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b... 32 0.26
At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family pr... 29 1.9
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea... 28 3.2
At4g36490.1 68417.m05181 SEC14 cytosolic factor, putative / phos... 27 5.7
At4g28590.1 68417.m04089 expressed protein 27 5.7
At3g30550.1 68416.m03866 hypothetical protein includes At2g05890... 27 5.7
At1g59453.1 68414.m06679 transcription factor-related weak simil... 27 5.7
At1g59077.1 68414.m06670 hypothetical protein 27 5.7
At1g58766.1 68414.m06659 hypothetical protein 27 5.7
At5g63450.1 68418.m07965 cytochrome P450, putative 27 7.5
At5g45460.1 68418.m05585 expressed protein 27 7.5
At2g04620.1 68415.m00470 cation efflux family protein potential ... 27 7.5
At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase f... 27 7.5
At1g20410.1 68414.m02545 expressed protein 27 7.5
At1g04120.1 68414.m00401 ABC transporter family protein Strong s... 27 7.5
At5g47690.1 68418.m05887 expressed protein 27 9.9
At5g07400.1 68418.m00847 forkhead-associated domain-containing p... 27 9.9
At2g18180.1 68415.m02115 SEC14 cytosolic factor, putative / phos... 27 9.9
>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
binding region-containing protein similar to U4/U6
snRNP-associated 61 kDa protein [Homo sapiens]
GI:18249847; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 485
Score = 31.9 bits (69), Expect = 0.26
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +3
Query: 21 PAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNV 200
P+ +I+ + V +L S +P D+L++ L D DSA +K E K + N+
Sbjct: 161 PSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKMGSIAPNL 220
>At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family
protein similar to CHY1 [gi:8572760]; contains Pfam
profile PF00388 enoyl-CoA hydratase/isomerase family
protein
Length = 387
Score = 29.1 bits (62), Expect = 1.9
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Frame = +3
Query: 180 SEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRL---IFAENAIKLMYK 350
+E IT V+ L R++ ++ Q +G K + DC EFRL I + MY
Sbjct: 263 NEWITPVIKGLKRSSPTG-LKIVLQSIREGRKQTLSDCLKKEFRLTLNILRKTISPDMY- 320
Query: 351 RDGL-ALTLSNDVQGDDGRPAYGDGKDKTSPRVSWKLIALWENNKVYFKILNTERN 515
+G+ ALT+ D PA D D +K L+E++ + +I TE N
Sbjct: 321 -EGIRALTIDKD-NSPKWNPATLDEVDDEKINSVFK---LFEDDDIELQIPETEEN 371
>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400); low
similarity (47%) to Agamous-like MADS box protein AGL5
(SP:P29385) {Arabidopsis thaliana}
Length = 892
Score = 28.3 bits (60), Expect = 3.2
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Frame = -2
Query: 455 LPADSRACLVLAVAVGRSAIVA--------LNIIAQRQSETVALVHKLNRVFGEDKSELN 300
LP D +CL +A++ G A+ LN + Q +S+ A+ N +SE +
Sbjct: 488 LPDDFLSCLGVALSPGNLAVALVRNFNVELLNPMYQARSQKAAVEFLWNGAQQSGESEDS 547
Query: 299 WETITDDVLG 270
ET+T+ +LG
Sbjct: 548 TETVTEAILG 557
>At4g36490.1 68417.m05181 SEC14 cytosolic factor, putative /
phosphoglyceride transfer protein, putative similar to
phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus]; contains Pfam PF00650 :
CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO,
N-terminus; supporting cDNA gi|23463078|gb|BT000834.1|
Length = 543
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 6 RSKXKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKS 155
RS ++ L + V ++ +VP + E LY+S V D D+++ KS
Sbjct: 398 RSPIFTGVMALVMGVVTMIKVTKNVPRKLTESTLYSSPVYCD-DASMNKS 446
>At4g28590.1 68417.m04089 expressed protein
Length = 331
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 344 HKLNRVFGEDKSELNWETITDD 279
H + V G+D SE++WE DD
Sbjct: 180 HPIKNVVGDDGSEIDWEGEIDD 201
>At3g30550.1 68416.m03866 hypothetical protein includes At2g05890,
At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
At1g39430, At2g10460, At4g03640, At5g35250
Length = 509
Score = 27.5 bits (58), Expect = 5.7
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 12 KXKPAIVILCLFVASLYAA-DSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV 188
K K +LC+ +++ DS + + + + +V DYD+ V+ S + E+ S +
Sbjct: 398 KGKTFQFLLCVQRENIFGGYDSFTVARVYTDNIADEIVQEDYDAYVDPSSLISIEQDSLM 457
Query: 189 ITNVVN 206
+TN V+
Sbjct: 458 LTNGVD 463
>At1g59453.1 68414.m06679 transcription factor-related weak similarity
to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
Length = 1729
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 93 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 200
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 1545 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 1581
>At1g59077.1 68414.m06670 hypothetical protein
Length = 665
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 93 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 200
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517
>At1g58766.1 68414.m06659 hypothetical protein
Length = 665
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 93 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 200
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517
>At5g63450.1 68418.m07965 cytochrome P450, putative
Length = 510
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 420 GKDKTSPRVSWKLIALWENNKVYFKILNTERN 515
G+D TS ++W L +N+ V KIL+ RN
Sbjct: 306 GRDTTSAAMTWLFWLLSQNDDVETKILDELRN 337
>At5g45460.1 68418.m05585 expressed protein
Length = 703
Score = 27.1 bits (57), Expect = 7.5
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Frame = +3
Query: 60 YAADSDVPNDILEEQLYNSVVVADYDSAV----EKSKHLYEEKKSEVITNVVNKLIRNNK 227
+A ++P D E+L V DYD ++ ++ Y+E K E I ++ + N
Sbjct: 611 WALRDNLPEDAEREKLVRYVTKVDYDQSLLMWHIATEFCYQEHKKETIPEGYDEQCKQNH 670
Query: 228 MNCMEYAYQLWLQGSKDIVRDCF 296
+ + + L Q VR C+
Sbjct: 671 LRLHDVSPDLATQSD---VRGCW 690
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 27.1 bits (57), Expect = 7.5
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -2
Query: 110 VKLLLQNVVRDVGICSIQRCH 48
+K ++N+++ G+CSIQR H
Sbjct: 727 LKEAMRNILKTKGVCSIQRLH 747
>At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase
family protein contains Pfam profile PF01812
5-formyltetrahydrofolate cyclo-ligase
Length = 354
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 271 PRTSSVIVSQLSSDLSSPKTRLSLCTSATVS 363
PR + S L SDL P+T + CTS V+
Sbjct: 171 PRLRTGFFSVLESDLLKPETIMEACTSVGVA 201
>At1g20410.1 68414.m02545 expressed protein
Length = 504
Score = 27.1 bits (57), Expect = 7.5
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Frame = +3
Query: 27 IVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVN 206
I I+CL + L SDV ++++ +S VA V++ +H ++ EV +V +
Sbjct: 97 ICIVCLGI--LQFVFSDVKKELVKSDS-SSDYVARITDLVKQDRHEFDSFGLEV--SVPS 151
Query: 207 KLIRNNKMNCM----EYAYQLWLQGSKDIVRDCFPV 302
++ N + +Y+ ++WLQ K V+D V
Sbjct: 152 TIMENERALLSYLKGKYSTEVWLQRDKISVKDALKV 187
>At1g04120.1 68414.m00401 ABC transporter family protein Strong
similarity to MRP-like ABC transporter gb|U92650 from A.
thaliana and canalicular multi-drug resistance protein
gb|L49379 from Rattus norvegicus
Length = 1514
Score = 27.1 bits (57), Expect = 7.5
Identities = 8/32 (25%), Positives = 18/32 (56%)
Frame = +1
Query: 46 SWHLCMLQIPTSLTTFWRSSFTIASSLPITTV 141
+W + +L +P ++ FW + +ASS + +
Sbjct: 1086 TWQVFLLVVPVAVACFWMQKYYMASSRELVRI 1117
>At5g47690.1 68418.m05887 expressed protein
Length = 1638
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/44 (25%), Positives = 26/44 (59%)
Frame = +3
Query: 87 DILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIR 218
D+LE++ Y V+ + + +YE ++SEV+ + +K+++
Sbjct: 734 DMLEDKRYQPAVLQCLGCIAQIAMPVYETRESEVVEFIRSKILK 777
>At5g07400.1 68418.m00847 forkhead-associated domain-containing
protein / FHA domain-containing protein
Length = 1084
Score = 26.6 bits (56), Expect = 9.9
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = -2
Query: 410 GRSAIVALNIIAQRQSETVALVHKLNRVFGEDKSELNWETITDDVLGALEPKLIGVLHAV 231
GR A + +++ + T + + RVF ++E+N V G PK +GV+ V
Sbjct: 167 GRDASI-VSVSSGHSRGTFSSGKRSKRVFAPMENEIN-----SPVSGFYPPKAVGVVERV 220
Query: 230 HLVVSY 213
+ +VSY
Sbjct: 221 NSLVSY 226
>At2g18180.1 68415.m02115 SEC14 cytosolic factor, putative /
phosphoglyceride transfer protein, putative contains
Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminussimilar to phosphatidylinositol
transfer-like protein IV (GI:14486707) [Lotus
japonicus];
Length = 558
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +3
Query: 6 RSKXKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKH 161
RS ++ + V ++ +VP + E +Y+S V D +S + S H
Sbjct: 401 RSPIFTGVMAFVMGVVTMIRVTKNVPRKLTESTIYSSPVYCDENSMNKSSMH 452
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,315,374
Number of Sequences: 28952
Number of extensions: 166456
Number of successful extensions: 714
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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