Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31757
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   6.7  

>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 14/183 (7%)
 Frame = +3

Query: 3   SLKVYITYKICMFTCECFLNCKSYLLTKPSTICNIFTKFLIVVFILINKIFIVYSKRYI* 182
           +LK YI + IC+F     L    Y     S      + F I++ + I   ++V  +++  
Sbjct: 159 NLKNYIAFPICLFVINHILILLGYFQCSYSVF--YASVFYILLGVFIRVFYLVNKEKF-- 214

Query: 183 LRRNKKSI*LF*ISLRNYCLIK--LVLYG*IIIGCC-FTFYSFNDIYIIS-SGKT----- 335
               KK +     S+   CLI+  ++  G I +    FT   F  I+ I+  G       
Sbjct: 215 ---EKKELAFLFSSIVVACLIQFNVLPLGTINLSVTRFTILCFMQIFCINWDGIARIQFY 271

Query: 336 --NFESKLVSFSINELINK*SDKGCGILVSVIILRKFYY---NSNIYVSQVSLMNKKICN 500
              F+  L+   I+ +INK + +    ++S +    F +    S+I  +     N +I  
Sbjct: 272 LGKFDISLIMALISAIINKTASQNSIKIISCLYQVGFCFFKIGSSITANLKLPDNSRIYR 331

Query: 501 IYN 509
           +YN
Sbjct: 332 LYN 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,747,192
Number of Sequences: 5004
Number of extensions: 29368
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)