Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31757
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.5  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   7.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   10.0 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   10.0 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   10.0 

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 138 LINKIFIVYSKRYI*LRRNKKS 203
           LI KIF+ Y    + +RR KK+
Sbjct: 333 LIRKIFLKYLPTILMMRRPKKT 354


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = +2

Query: 236 LPHKIGVIWLDYNW 277
           LP ++ V W  Y W
Sbjct: 87  LPFELSVFWQQYPW 100


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 255 TPIL*GNNFVN*FKIVKCFFYFVSIKCI 172
           +PI   N  +   KI++CFF + +I  I
Sbjct: 105 SPISDPNALIKISKILECFFKYKTINQI 132


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 390 SDKGCGILVSVIILRKFYYNSNIYVSQVSLMNK 488
           S+KG  IL ++I      YN+  Y S  +L  K
Sbjct: 355 SEKGLNILGNIIEGNADSYNTEFYGSIDTLARK 387


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 390 SDKGCGILVSVIILRKFYYNSNIYVSQVSLMNK 488
           S+KG  IL ++I      YN+  Y S  +L  K
Sbjct: 355 SEKGLNILGNIIEGNADSYNTEFYGSIDTLARK 387


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = +2

Query: 236 LPHKIGVIWLDYNW 277
           LP+++ + W  Y W
Sbjct: 94  LPNELSLFWQQYPW 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,085
Number of Sequences: 438
Number of extensions: 1974
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)