Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31756
         (497 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52340.1 68418.m06495 exocyst subunit EXO70 family protein st...    27   9.3  
At4g23350.1 68417.m03368 expressed protein predicted proteins, A...    27   9.3  

>At5g52340.1 68418.m06495 exocyst subunit EXO70 family protein
           strong similarity to unknown protein (emb|CAB83315.1);
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit;
          Length = 695

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -2

Query: 355 ATKHVFPHGKYKTCI*YVINYVKLK*NPLIYLR*MIVELSASNPDLE 215
           ATK     G       YVINYVK   +    LR +  E  + +PD E
Sbjct: 455 ATKTAVMDGTVHPLTSYVINYVKFLFDYQTTLRLLFQEFDSKDPDSE 501


>At4g23350.1 68417.m03368 expressed protein predicted proteins,
           Arabidopsis thaliana contains Pfam profile PF03080:
           Arabidopsis proteins of unknown function
          Length = 386

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +2

Query: 338 KHMFSCALYLRHLYGWVGNTKRGRVPMRRSRPICVR 445
           K  F   L L   +G V N  RG V +  SRPIC +
Sbjct: 326 KAAFISGLKLFDGHGKVYNPGRGTVKVHESRPICYK 361


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,460,516
Number of Sequences: 28952
Number of extensions: 206318
Number of successful extensions: 458
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)