Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31755
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac...    29   0.31 
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc...    29   0.31 
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    28   0.72 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   3.8  
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    25   6.7  

>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 249 GDALKQPAAAQCA*LWPRPISDLG 320
           G A+  P A +CA LWPR  S+ G
Sbjct: 113 GSAITGPVAKECADLWPRIASNAG 136


>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 249 GDALKQPAAAQCA*LWPRPISDLG 320
           G A+  P A +CA LWPR  S+ G
Sbjct: 113 GSAITGPVAKECADLWPRIASNAG 136


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +2

Query: 116 GKKAFSNRRPLYKELSIRG*REPALVLREEQARGRRS 226
           GKK           L+ RG R+P L+LREE+ R R S
Sbjct: 390 GKKELEASSNDASRLTQRGRRDPGLLLREEKIRKRLS 426


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 349 LYFLNISIYFCYNFFITSTKLYLFS*SF--LRAXVFFFL 459
           L+FL+ S  F + FF++   +  FS SF  L    FFFL
Sbjct: 124 LFFLSFSFSFSFLFFLSQIFIVYFS-SFPILHFLFFFFL 161


>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -3

Query: 154 LVKWPTVGEGLLTGVVHAREVAASSELPWLTRDRRKDCGCYXATLRR 14
           L+ W  +  GLLT  + A E    S+    TR      G Y A L R
Sbjct: 237 LIPWSPLARGLLTRSIDANEETIRSKTDLYTRALEFGAG-YKAILSR 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,757,326
Number of Sequences: 5004
Number of extensions: 31129
Number of successful extensions: 78
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)