Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31755
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25273| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.56 
SB_19720| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)                     29   1.7  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_50440| Best HMM Match : SOUL (HMM E-Value=1.7)                      27   6.9  
SB_50295| Best HMM Match : Syntaxin (HMM E-Value=7.8)                  27   6.9  
SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022)                 27   9.2  

>SB_25273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 57  SRVSQGSSLDAATSRACTTPVRRPSPTVGHFTRSSA 164
           S ++ G+   A  S A +T   RPSPT+ H + +SA
Sbjct: 742 SIINSGTPTSAMASSASSTTEIRPSPTINHMSTTSA 777


>SB_19720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 420

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
 Frame = +3

Query: 63  VSQGSSLDAATSRACTTPVRRPSPTVGHFTRSSASGDDVNLLSFYAKNRLAAAG-LAVEN 239
           +  G +LD     + + P+RRP+ T   +  +SA+G    L        ++  G LA+  
Sbjct: 126 IQLGKALDRHRFLSMSVPLRRPNSTTVDYCWNSATGQG-QLGHIDTHKFISVWGDLALAL 184

Query: 240 ATAGDALKQPAAAQCA*LWPRPISDLG 320
           +  G AL  P    C    PR +   G
Sbjct: 185 SMGGTALAPPTGGICFGRCPRGVGSYG 211


>SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)
          Length = 859

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +3

Query: 54  LSRVSQGSSLDAATSRACTTPVRRPSPTVGHFTRSSASGDD 176
           ++R S   +++A  SR+ +TP R  +   GH+ R S++G +
Sbjct: 406 MARRSSAENVNAVPSRSPSTPRRSVTLPAGHYGRRSSAGSN 446


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/69 (26%), Positives = 26/69 (37%)
 Frame = +3

Query: 114  PVRRPSPTVGHFTRSSASGDDVNLLSFYAKNRLAAAGLAVENATAGDALKQPAAAQCA*L 293
            P + P P +GHF    +   +      Y    LA +    +  +AGD   QP    C   
Sbjct: 3118 PHKNPCP-LGHFCPEGSGDKNPCSPGHYGDRELATSPSDCKKCSAGDFNDQPGGKACLRC 3176

Query: 294  WPRPISDLG 320
                 SD+G
Sbjct: 3177 GSSSTSDVG 3185


>SB_50440| Best HMM Match : SOUL (HMM E-Value=1.7)
          Length = 437

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +3

Query: 84  DAATSRACTTPVRRPSPTVGHFTRSSASGDDVNLLSFYAKNR-LAAAGLAVENATAGDAL 260
           DA  + +  TPV   +      +    +G  V+L+  Y + R LAAA      AT G  L
Sbjct: 225 DAFGTPSAHTPVPESNSAWSASSVIGVAGLLVSLIGLYTRRRELAAAFTRTPTATEGHVL 284

Query: 261 KQPAAAQCA 287
                 QCA
Sbjct: 285 DSCLRTQCA 293


>SB_50295| Best HMM Match : Syntaxin (HMM E-Value=7.8)
          Length = 150

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 127 GLLTGVVHAREVAASSELPWLTRDRRK 47
           GLL  + H+R     SE+PW + + RK
Sbjct: 64  GLLIAMRHSRRKQLQSEVPWYSEEIRK 90


>SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022)
          Length = 664

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 108 TTPVRRPSPTVGHFTRSSASGD 173
           ++P + P PT G F++ +  GD
Sbjct: 139 SSPAKNPGPTTGRFSKDAIGGD 160


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,582,560
Number of Sequences: 59808
Number of extensions: 244985
Number of successful extensions: 686
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)