Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31755
(516 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein pr... 31 2.4
X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17 pro... 31 2.4
BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein. 31 2.4
BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23 p... 31 2.4
BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23 p... 31 2.4
BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23 p... 31 2.4
BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal pr... 31 2.4
AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23 p... 31 2.4
U89337-3|AAB47488.1| 4289|Homo sapiens tenascin X protein. 29 7.3
BX679671-9|CAM26072.1| 2148|Homo sapiens tenascin XB protein. 29 7.3
BC065218-1|AAH65218.1| 409|Homo sapiens RHBG protein protein. 29 7.3
AL929593-3|CAI41781.1| 3295|Homo sapiens tenascin XB protein. 29 7.3
AL772248-1|CAI18078.1| 4222|Homo sapiens tenascin XB protein. 29 7.3
AL662884-1|CAI18332.1| 4222|Homo sapiens tenascin XB protein. 29 7.3
AL662849-16|CAI17471.1| 4222|Homo sapiens tenascin XB protein. 29 7.3
AL662828-1|CAI17414.1| 4222|Homo sapiens tenascin XB protein. 29 7.3
AL645922-1|CAI41718.1| 4222|Homo sapiens tenascin XB protein. 29 7.3
AL049547-2|CAB89296.1| 4288|Homo sapiens dJ34F7.1.1 (tenascin XB... 29 7.3
AF019413-1|AAB67981.1| 1697|Homo sapiens tenascin X protein. 29 7.3
>X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein
protein.
Length = 140
Score = 31.1 bits (67), Expect = 2.4
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 219 AGLAVENA--TAGDALKQPAAAQCA*LWPRPISDLG 320
AG+ V N G A+ P A +CA LWPR S+ G
Sbjct: 102 AGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAG 137
>X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17
protein.
Length = 140
Score = 31.1 bits (67), Expect = 2.4
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 219 AGLAVENA--TAGDALKQPAAAQCA*LWPRPISDLG 320
AG+ V N G A+ P A +CA LWPR S+ G
Sbjct: 102 AGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAG 137
>BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein.
Length = 140
Score = 31.1 bits (67), Expect = 2.4
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 219 AGLAVENA--TAGDALKQPAAAQCA*LWPRPISDLG 320
AG+ V N G A+ P A +CA LWPR S+ G
Sbjct: 102 AGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAG 137
>BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 31.1 bits (67), Expect = 2.4
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 219 AGLAVENA--TAGDALKQPAAAQCA*LWPRPISDLG 320
AG+ V N G A+ P A +CA LWPR S+ G
Sbjct: 102 AGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAG 137
>BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 31.1 bits (67), Expect = 2.4
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 219 AGLAVENA--TAGDALKQPAAAQCA*LWPRPISDLG 320
AG+ V N G A+ P A +CA LWPR S+ G
Sbjct: 102 AGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAG 137
>BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 31.1 bits (67), Expect = 2.4
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 219 AGLAVENA--TAGDALKQPAAAQCA*LWPRPISDLG 320
AG+ V N G A+ P A +CA LWPR S+ G
Sbjct: 102 AGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAG 137
>BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal
protein L23 protein.
Length = 134
Score = 31.1 bits (67), Expect = 2.4
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 219 AGLAVENA--TAGDALKQPAAAQCA*LWPRPISDLG 320
AG+ V N G A+ P A +CA LWPR S+ G
Sbjct: 96 AGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAG 131
>AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 31.1 bits (67), Expect = 2.4
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 219 AGLAVENA--TAGDALKQPAAAQCA*LWPRPISDLG 320
AG+ V N G A+ P A +CA LWPR S+ G
Sbjct: 102 AGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAG 137
>U89337-3|AAB47488.1| 4289|Homo sapiens tenascin X protein.
Length = 4289
Score = 29.5 bits (63), Expect = 7.3
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 48 FLLSRVSQGSSLDAATSRACTTPVRRPSPTVGHFTRSSASGDDVNL 185
FLL + G A T P +PSP +G T + A+ D V L
Sbjct: 3373 FLLFGLQNGKRHGPVPVEARTAPDTKPSPRLGELTVTDATPDSVGL 3418
>BX679671-9|CAM26072.1| 2148|Homo sapiens tenascin XB protein.
Length = 2148
Score = 29.5 bits (63), Expect = 7.3
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 48 FLLSRVSQGSSLDAATSRACTTPVRRPSPTVGHFTRSSASGDDVNL 185
FLL + G A T P +PSP +G T + A+ D V L
Sbjct: 1232 FLLFGLQNGKRHGPVPVEARTAPDTKPSPRLGELTVTDATPDSVGL 1277
>BC065218-1|AAH65218.1| 409|Homo sapiens RHBG protein protein.
Length = 409
Score = 29.5 bits (63), Expect = 7.3
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +3
Query: 75 SSLDAATSR-ACTTPVRRPSPTVGHFTRSSASGDDVNLLSFYAKNRLAAAGLAVENATAG 251
++L A R A T + T+G F S+ G+D L + +N A G+ V T+
Sbjct: 209 TALGAGQHRTALNTYYSLAASTLGTFALSALVGEDGRLDMVHIQNAALAGGVVV--GTSS 266
Query: 252 DALKQPAAAQCA*LWPRPISDLG 320
+ + P A A R +S LG
Sbjct: 267 EMMLTPFGALAAGFLARTVSTLG 289
>AL929593-3|CAI41781.1| 3295|Homo sapiens tenascin XB protein.
Length = 3295
Score = 29.5 bits (63), Expect = 7.3
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 48 FLLSRVSQGSSLDAATSRACTTPVRRPSPTVGHFTRSSASGDDVNL 185
FLL + G A T P +PSP +G T + A+ D V L
Sbjct: 2379 FLLFGLQNGKRHGPVPVEARTAPDTKPSPRLGELTVTDATPDSVGL 2424
>AL772248-1|CAI18078.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 29.5 bits (63), Expect = 7.3
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 48 FLLSRVSQGSSLDAATSRACTTPVRRPSPTVGHFTRSSASGDDVNL 185
FLL + G A T P +PSP +G T + A+ D V L
Sbjct: 3306 FLLFGLQNGKRHGPVPVEARTAPDTKPSPRLGELTVTDATPDSVGL 3351
>AL662884-1|CAI18332.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 29.5 bits (63), Expect = 7.3
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 48 FLLSRVSQGSSLDAATSRACTTPVRRPSPTVGHFTRSSASGDDVNL 185
FLL + G A T P +PSP +G T + A+ D V L
Sbjct: 3306 FLLFGLQNGKRHGPVPVEARTAPDTKPSPRLGELTVTDATPDSVGL 3351
>AL662849-16|CAI17471.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 29.5 bits (63), Expect = 7.3
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 48 FLLSRVSQGSSLDAATSRACTTPVRRPSPTVGHFTRSSASGDDVNL 185
FLL + G A T P +PSP +G T + A+ D V L
Sbjct: 3306 FLLFGLQNGKRHGPVPVEARTAPDTKPSPRLGELTVTDATPDSVGL 3351
>AL662828-1|CAI17414.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 29.5 bits (63), Expect = 7.3
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 48 FLLSRVSQGSSLDAATSRACTTPVRRPSPTVGHFTRSSASGDDVNL 185
FLL + G A T P +PSP +G T + A+ D V L
Sbjct: 3306 FLLFGLQNGKRHGPVPVEARTAPDTKPSPRLGELTVTDATPDSVGL 3351
>AL645922-1|CAI41718.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 29.5 bits (63), Expect = 7.3
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 48 FLLSRVSQGSSLDAATSRACTTPVRRPSPTVGHFTRSSASGDDVNL 185
FLL + G A T P +PSP +G T + A+ D V L
Sbjct: 3306 FLLFGLQNGKRHGPVPVEARTAPDTKPSPRLGELTVTDATPDSVGL 3351
>AL049547-2|CAB89296.1| 4288|Homo sapiens dJ34F7.1.1 (tenascin XB
(isoform 1)) protein.
Length = 4288
Score = 29.5 bits (63), Expect = 7.3
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 48 FLLSRVSQGSSLDAATSRACTTPVRRPSPTVGHFTRSSASGDDVNL 185
FLL + G A T P +PSP +G T + A+ D V L
Sbjct: 3372 FLLFGLQNGKRHGPVPVEARTAPDTKPSPRLGELTVTDATPDSVGL 3417
>AF019413-1|AAB67981.1| 1697|Homo sapiens tenascin X protein.
Length = 1697
Score = 29.5 bits (63), Expect = 7.3
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 48 FLLSRVSQGSSLDAATSRACTTPVRRPSPTVGHFTRSSASGDDVNL 185
FLL + G A T P +PSP +G T + A+ D V L
Sbjct: 781 FLLFGLQNGKRHGPVPVEARTAPDTKPSPRLGELTVTDATPDSVGL 826
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,550,724
Number of Sequences: 237096
Number of extensions: 1176557
Number of successful extensions: 3046
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3045
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4876707572
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -