Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31755
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical pr...    31   0.37 
Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical pr...    31   0.37 
U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...    30   1.1  
AF166167-1|AAD49856.1|  732|Caenorhabditis elegans adducin-relat...    29   2.6  
AF039043-5|AAK70639.1|  732|Caenorhabditis elegans Adducin prote...    29   2.6  
AF039713-13|AAB96719.2|  690|Caenorhabditis elegans Hypothetical...    28   4.6  
AC024817-23|AAV34784.1|  430|Caenorhabditis elegans C-type lecti...    27   8.0  
AC024817-22|AAK68532.2|  464|Caenorhabditis elegans C-type lecti...    27   8.0  

>Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical
           protein T01H10.8 protein.
          Length = 2692

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 4   FWCPYAASRXSIHNLSFYHE 63
           FWC Y  +   +HN  FYHE
Sbjct: 230 FWCKYPTNVTGLHNRKFYHE 249


>Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical
           protein T01H10.8 protein.
          Length = 2692

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 4   FWCPYAASRXSIHNLSFYHE 63
           FWC Y  +   +HN  FYHE
Sbjct: 230 FWCKYPTNVTGLHNRKFYHE 249


>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 219 AGLAVENA--TAGDALKQPAAAQCA*LWPRPISDLG 320
           AG+ V N     G A+  P A +CA LWPR  ++ G
Sbjct: 102 AGVIVNNKGEMKGSAITGPVAKECADLWPRIAANAG 137


>AF166167-1|AAD49856.1|  732|Caenorhabditis elegans adducin-related
           protein protein.
          Length = 732

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 21  SVAX*HPQSFLLSRVS--QGSSLDAATSRACTTPVRRPSPT 137
           S++  +P+   ++R S  QG+S    TSR+CTT      PT
Sbjct: 672 SISTEYPEKVKMTRFSSTQGTSEGNTTSRSCTTASEEEKPT 712


>AF039043-5|AAK70639.1|  732|Caenorhabditis elegans Adducin protein
           1, isoform b protein.
          Length = 732

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 21  SVAX*HPQSFLLSRVS--QGSSLDAATSRACTTPVRRPSPT 137
           S++  +P+   ++R S  QG+S    TSR+CTT      PT
Sbjct: 672 SISTEYPEKVKMTRFSSTQGTSEGNTTSRSCTTASEEEKPT 712


>AF039713-13|AAB96719.2|  690|Caenorhabditis elegans Hypothetical
           protein F57B10.1 protein.
          Length = 690

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 66  SQGSSLDAATSRA-CTTPVRRPSPTVGHF-TRSSASGDDVN 182
           S  SS+ ++TS +  T+P+ R S T+G F  +  AS DD N
Sbjct: 519 SSASSVASSTSTSSATSPIYRTSRTLGAFEDQCDASSDDSN 559


>AC024817-23|AAV34784.1|  430|Caenorhabditis elegans C-type lectin
           protein 82, isoform b protein.
          Length = 430

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 126 PSPTVGHFTRSSASGDDVNLL-SFYAKNRLAAAGLAV 233
           P PT+G FT +S   D ++++ +FY   +L+  G  V
Sbjct: 201 PDPTLG-FTSTSVGSDSLSIVENFYKNQQLSVCGSVV 236


>AC024817-22|AAK68532.2|  464|Caenorhabditis elegans C-type lectin
           protein 82, isoform a protein.
          Length = 464

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 126 PSPTVGHFTRSSASGDDVNLL-SFYAKNRLAAAGLAV 233
           P PT+G FT +S   D ++++ +FY   +L+  G  V
Sbjct: 235 PDPTLG-FTSTSVGSDSLSIVENFYKNQQLSVCGSVV 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,939,105
Number of Sequences: 27780
Number of extensions: 181789
Number of successful extensions: 576
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)