Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31755
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.5  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   7.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   10.0 

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 48  FLLSRVSQGSSLDAATSRACTTPVRRPSPTVGHFTRSSASGD 173
           F LSR  + ++  A T+R    PVR  +P    F + +++ D
Sbjct: 779 FGLSREIESATEGAYTTRGGKIPVRWTAPEAIAFRKFTSASD 820


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 514 VELSAXEFSNANKTLTRYLXXXXXPRAKMTRKINK 410
           + ++A  FSN    +T Y+        K+T  IN+
Sbjct: 23  IGINAANFSNFEDRVTMYVYEEIINGKKLTEIINE 57


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 149 YKELSIRG*REPALVLREEQARGRRSGRRECNS 247
           YK++ I    EP+   +     G R+G+R+  S
Sbjct: 188 YKQVEISQMTEPSSSTKSYVLEGPRNGKRKRKS 220


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,892
Number of Sequences: 438
Number of extensions: 2291
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)