Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31755
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14220.1 68417.m02194 zinc finger (C3HC4-type RING finger) fa...    28   3.2  
At5g10060.1 68418.m01165 expressed protein                             27   7.5  
At5g63840.1 68418.m08014 alpha-glucosidase, putative similar to ...    27   9.9  
At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical t...    27   9.9  
At4g16560.1 68417.m02505 heat shock protein-related contains sim...    27   9.9  
At4g16550.1 68417.m02504 heat shock protein-related contains sim...    27   9.9  
At2g36020.1 68415.m04423 abscisic acid-responsive HVA22 family p...    27   9.9  
At2g22720.3 68415.m02692 expressed protein                             27   9.9  
At2g22720.2 68415.m02691 expressed protein                             27   9.9  
At1g49770.1 68414.m05581 basic helix-loop-helix (bHLH) family pr...    27   9.9  

>At4g14220.1 68417.m02194 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 371

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
 Frame = +3

Query: 36  HPQSFL-LSRVSQGSSLDAATSRACTTP-VRRPSPTVGHFTRSSASGDDVNLLSFYAKNR 209
           HP   + L R+S  S ++   S  C +P    PSP  GH +  + S +   +    + +R
Sbjct: 181 HPTDLVNLYRLSAISHVEHQNSNPCPSPGSMTPSPVSGHSSIPADSNNGSRISPGPSPSR 240

Query: 210 LAAAGLAVENATAGDALKQPAAAQCA 287
            + +  + E ++  +A+K   AA  A
Sbjct: 241 SSQSPKSPEASSLPEAIKSKLAAASA 266


>At5g10060.1 68418.m01165 expressed protein
          Length = 469

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +2

Query: 119 KKAFSNRRPLYKELSIRG*REPALVLREEQARGRRSGRRECNSGR-RAETAGGGAVRVAL 295
           ++ F +R    K++ +       L + +++ RG +S +RE  S R +  ++GG A ++A 
Sbjct: 115 RRVFGSRSKSLKDVMLGEDVPLPLDISKKRPRGSKSSKRESKSSRTKLASSGGVAEKIAS 174

Query: 296 A 298
           A
Sbjct: 175 A 175


>At5g63840.1 68418.m08014 alpha-glucosidase, putative similar to
           alpha-glucosidase GI:2648032 from [Solanum tuberosum]
          Length = 921

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -3

Query: 181 FTSSPDAELLVKWPTVGEGLLTGVVHAREVAASSELPWLTRDRRKD 44
           F  +P+ ELLV+W  VG        HA       E PWL  +R  +
Sbjct: 621 FFGNPEPELLVRWYQVGAYYPFFRGHAHHDTKRRE-PWLFGERNTE 665


>At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893
          Length = 687

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 57  SRVSQGSSLDAATSRACTTPVRRPSPTVGHFTR-SSASGDDVNL 185
           SR S  SS   +T+  CT+    P+P+V      SS SG+  +L
Sbjct: 625 SRESSDSSSTQSTTTTCTSTASSPAPSVTEEEEVSSLSGEVTSL 668


>At4g16560.1 68417.m02505 heat shock protein-related contains
           similarity to SWISS-PROT:P31170 small heat shock
           protein, chloroplast precursor [Arabidopsis thaliana]
          Length = 532

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 3   LLVPLRSVAX*HPQSFLLSRVSQGSSLDAATSRACTTPVRRPSPTV 140
           LL+P+ +VA  HP + L     +G         A T P  RP P+V
Sbjct: 196 LLIPIVAVAGGHPLAHLRGLNPEGCRGTDPFDPAFTGPTIRPHPSV 241


>At4g16550.1 68417.m02504 heat shock protein-related contains
           similarity to Swiss-Prot:P31170 small heat shock
           protein, chloroplast precursor [Arabidopsis thaliana]
          Length = 743

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 3   LLVPLRSVAX*HPQSFLLSRVSQGSSLDAATSRACTTPVRRPSPTV 140
           LL+P+ +VA  HP + L     +G         A T P  RP P+V
Sbjct: 350 LLIPIVAVAGGHPLAHLRGLNPEGCRGTDPFDPAFTGPTIRPHPSV 395


>At2g36020.1 68415.m04423 abscisic acid-responsive HVA22 family
           protein weak similarity to SP|Q00765 Polyposis locus
           protein 1 (TB2 protein) {Homo sapiens}; contains Pfam
           profile PF03134: TB2/DP1, HVA22 family
          Length = 258

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 78  SLDAATSRACTTPVRRPSPTVGHFTRSSASGDD-VNL 185
           SL+  TSR    P   P PT G  +  + +GDD VN+
Sbjct: 195 SLEKQTSRGRKWPPPTPPPTPGRDSAGTFNGDDGVNI 231


>At2g22720.3 68415.m02692 expressed protein
          Length = 569

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 51  LLSRVSQGSSLDAATSRACTTPVRRPSPTVGHFTRSSASGDDVN 182
           L SR  Q S ++  T+ +     +RP    GH +R S+SG  +N
Sbjct: 189 LSSRPKQSSGINGRTAHSPHREEKRPVSANGH-SRPSSSGSQMN 231


>At2g22720.2 68415.m02691 expressed protein
          Length = 672

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 51  LLSRVSQGSSLDAATSRACTTPVRRPSPTVGHFTRSSASGDDVN 182
           L SR  Q S ++  T+ +     +RP    GH +R S+SG  +N
Sbjct: 292 LSSRPKQSSGINGRTAHSPHREEKRPVSANGH-SRPSSSGSQMN 334


>At1g49770.1 68414.m05581 basic helix-loop-helix (bHLH) family
           protein contains similarity to putative bHLH
           transcription factor GB:AAC63587 GI:3738090 from
           [Arabidopsis thaliana]
          Length = 308

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 429 IFARGCFFFFKYRVKVLFALENSXALNST 515
           +F   C+ F KY ++VLFA  +S    ST
Sbjct: 240 VFTSVCYLFEKYNMEVLFANVSSNVFWST 268


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,332,195
Number of Sequences: 28952
Number of extensions: 167908
Number of successful extensions: 421
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)