Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31752
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc...    29   0.55 
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    25   6.7  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   8.9  

>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 414

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 103 CGFYFHNASITQNLRRAAEKLYEDPIEEVERRL 201
           CG Y  +ASI   +++A    YE  +EEVE++L
Sbjct: 183 CGIYIFDASIFDEIKKA----YERRLEEVEKQL 211


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 43  TPAGKFGSAIAIGSLLIGAGCGF 111
           +P G+F  A   G  LI AGC F
Sbjct: 145 SPEGQFEKAYEKGKRLIRAGCAF 167


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 82   SLLIGAGCGFYFHNASITQNLRRAAEKLY 168
            SL +    G   H+A +T+N R+ +E+L+
Sbjct: 1414 SLKLALPFGIALHHAGLTENDRKISEELF 1442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,916,717
Number of Sequences: 5004
Number of extensions: 34674
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)