Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31748
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 29 0.31
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 29 0.41
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 28 0.72
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce... 26 2.9
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 26 3.8
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 3.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 5.1
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 25 5.1
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.7
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ... 25 6.7
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 25 8.9
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 8.9
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.9
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 29.5 bits (63), Expect = 0.31
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +1
Query: 208 GKPKNIDDAXEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDL 375
G ID++ +++KR Y ++ ++ LE ++R + EISD +++ L
Sbjct: 837 GSDNRIDESELNSVKRSLLKYENKLQIIKSSSSGLEEQMQRINSEISDKRNELESL 892
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 29.1 bits (62), Expect = 0.41
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 268 YHERIARLEDEKFDLEYIVKRKDMEISDLNS---QVNDLRGKFVKPTLKKVSKYENKFAK 438
+H+ + +DE Y++ K ME +L+ QVN + K +K VS + N +A+
Sbjct: 578 FHQLVFSADDEYLASVYLIYLKQMETKNLSEEKPQVNKIVKKILKKYDSSVSVW-NTYAQ 636
Query: 439 LQKKAAEF 462
L+ + F
Sbjct: 637 LEHLSGAF 644
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 28.3 bits (60), Expect = 0.72
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +1
Query: 250 KRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYE 423
+R+C+ + + + + +DL++ E S L+ QVNDL + K T +K+S+ +
Sbjct: 897 QRLCEGRTKELLNSQQKLYDLKHSYSSVMTEKSKLSDQVNDLTEQ-AKITQRKLSEVQ 953
>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 2.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 497 FFFTTFNWLRKLNSAAFFWSLANLFSYLETFFSV 396
FFF T +L KLNS ++ L+++L SV
Sbjct: 148 FFFLTILFLSKLNSVPLNKKISYLYTFLLAIVSV 181
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 238 EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVN 369
ED+ + D+H A E+EK + K ME+ ++N V+
Sbjct: 23 EDSNRGTITDFHIETANNEEEKDANVILNKSVKMEVEEVNGHVD 66
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 268 YHERIARLEDEKFDLEYIVKRKDMEISDLNSQV 366
+HE I +L+D + +L +++K++ IS L V
Sbjct: 599 FHESINKLQDREKELTSNLEKKNLVISSLRETV 631
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 5.1
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 325 KRKDMEISDLNSQVNDLRGKFVKPTLKK-VSKYENKFAKLQKKAAEFNFRNQLKVVKKKE 501
K+ D I+ S + G+ + P L + + +E++F Q+ AE+ + Q + + +
Sbjct: 1368 KQTDTGITHFRSGMTT-NGEHLIPNLYRYIQPWESEFIDSQRVWAEYAMKRQEALQQNRR 1426
Query: 502 FTLEE 516
TLE+
Sbjct: 1427 LTLED 1431
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 315 FQIEFFIFKTSDAFMVVFANPLNSIFVGVVNVLRFXAPLLD 193
+ +++ + K + M V +PL S F+ +N LRF + D
Sbjct: 781 YLLKYSLGKGAKTLMFVNVSPLKSQFMDTLNSLRFATKVND 821
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.0 bits (52), Expect = 6.7
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +1
Query: 289 LEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLK-KVSKYENKFAKLQKK-AAEF 462
LE + L + ++KD +I +L ++NDL + TLK E K + K+ AA
Sbjct: 149 LEKQVKTLHDLNEQKDKKIKELKERINDLTYDY--ETLKANADDSEGKQTLVSKREAALE 206
Query: 463 NFRNQLKVVKKKEFTLEE 516
F+++L ++++ E E
Sbjct: 207 EFQSKL-LIRENEINKRE 223
>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 451
Score = 25.0 bits (52), Expect = 6.7
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 286 RLEDEKFDLE-YIVKRKDME-ISDLNSQVNDLRGKFV 390
+LEDEKFD E Y+ D E I ++ + D G+F+
Sbjct: 206 QLEDEKFDAEHYMADFYDREMIDEILHYIPDYIGEFL 242
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 373 LRGKFVKPTLKKVSKYENKFAKL 441
L+GKF+K KY+N+F +L
Sbjct: 359 LKGKFLKDLNNLFEKYDNEFDEL 381
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = -2
Query: 461 NSAAFFWSLANLFSYLETFFSVGLTNLPLRSLTWEFRSEISISFLLTMYS 312
N+ +F SLA+ ++ T + L N L F+S +++ LL +++
Sbjct: 130 NAKKYFSSLADGHNFTLTLYKFSLDNQTFSQLLSRFKSFATLTELLQVHN 179
>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 390
Score = 24.6 bits (51), Expect = 8.9
Identities = 14/67 (20%), Positives = 29/67 (43%)
Frame = +1
Query: 250 KRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYENK 429
K + D H R +ED+ + + + +++ L+ +D K ++ +NK
Sbjct: 82 KSLSCDLHSRKQLIEDDLSNRKKSINIASQKLAGLSHSTSDYFSKEYLTAYRRSELLQNK 141
Query: 430 FAKLQKK 450
+ QKK
Sbjct: 142 LHEYQKK 148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.133 0.368
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,590,595
Number of Sequences: 5004
Number of extensions: 26096
Number of successful extensions: 143
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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