Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31745
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    29   0.55 
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   6.7  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   6.7  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    25   6.7  

>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 432 MFFPSWYKTNQSPICSLRDTASICSC 355
           +F P  YKTN +PI  L  T ++CSC
Sbjct: 256 IFTPILYKTNNNPII-LPITVTVCSC 280


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 202 QWQNTQAIEFLHRTGWTVFMEGAFSYFRXHXGHRVHAFPRAPFSV 68
           QW++T  IE +HR G+ + ++   S      G R +     PFS+
Sbjct: 155 QWRDT--IEEIHRRGFYLVLDLTISTLGDLIGFRKYLNSTTPFSL 197


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 362 ALVAQGDCVRAASRDXRGVQRQRPCG 285
           A +++  C R   +  +G  RQRPCG
Sbjct: 335 AAISRSRCSRC-KKSKKGCDRQRPCG 359


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = +2

Query: 350 APQEQIEAVSRKLQIGDWFV--LYQLGKNIDPLIYKELMTELAEKFEGND 493
           AP+E +EA+ R++   + FV  L ++G +   L+ +++  ++    EGN+
Sbjct: 56  APKEYVEALERQIAFFEAFVKKLAKVGSDEQSLMIQDMNNKIVN--EGNE 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,088,201
Number of Sequences: 5004
Number of extensions: 38791
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)