Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31745
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916 28 3.9
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 28 3.9
06_03_0969 - 26413534-26413594,26415020-26415318 28 3.9
08_01_0515 - 4490855-4490902,4490992-4491072,4491752-4491823,449... 28 5.1
02_05_0656 + 30671152-30671227,30671330-30671464,30671591-306716... 28 5.1
01_05_0484 - 22621614-22621676,22621798-22621911,22622006-226224... 27 6.8
12_02_1052 - 25698263-25698394,25698587-25698679,25698945-256989... 27 8.9
03_04_0002 - 16215855-16215999,16216100-16216157,16216262-162165... 27 8.9
01_06_0337 - 28535265-28535381,28535463-28535573,28535686-285358... 27 8.9
>12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916
Length = 259
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 309 PAXVSTCCAHAVALRHKSKSKPYPASYRSATGSFCTNSGRT 431
P S+C +H + RH A+ SA GSF + S T
Sbjct: 8 PPPPSSCLSHGLLRRHHRSGSSAAATAYSAAGSFASASAFT 48
>08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 353 PQEQIEAVSR-KLQIGDWFVLYQLGKNIDPLIYKELMTELAEK 478
P++ + V +++GDW+ L G P Y EL ELA+K
Sbjct: 876 PKDHVCTVEELSVKVGDWYYLDGTGHERGPFSYSELQ-ELAKK 917
>06_03_0969 - 26413534-26413594,26415020-26415318
Length = 119
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/48 (39%), Positives = 22/48 (45%)
Frame = -2
Query: 434 QCSSRVGTKRTSRRSVACGIRLRFALVAQGDCVRAASRDXRGVQRQRP 291
Q S +R SR + A R R AQG AA R RG Q +RP
Sbjct: 27 QGSPAAAARRRSRAARATA-RWRSRAAAQGSPAAAARRRSRGTQARRP 73
>08_01_0515 -
4490855-4490902,4490992-4491072,4491752-4491823,
4492296-4492373,4493316-4493444,4493862-4493942,
4494064-4494205,4494672-4494865,4494962-4495027,
4495108-4495194,4495326-4495376
Length = 342
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -3
Query: 211 DDIQWQNTQAIEFLHRTGWTVFMEGAFSYFRXHXGHRVHAFPRAPFSVKXTT 56
+DI N+ +H T T +GAF+++ R+ AF R P + +T
Sbjct: 238 NDIFSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAFSRCPLPIPCST 289
>02_05_0656 +
30671152-30671227,30671330-30671464,30671591-30671676,
30672184-30672278,30672431-30672556,30672659-30672809
Length = 222
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 398 DWFVLYQLGKNIDPLIYKELMTEL 469
+W +LY++GK+ D L+ KE + E+
Sbjct: 179 EWKILYKIGKDKDGLLRKEAVREV 202
>01_05_0484 -
22621614-22621676,22621798-22621911,22622006-22622453,
22623052-22623179,22623747-22623821,22623954-22624040
Length = 304
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 324 TCCAHAVALRHKSKSKPYPASYRSATG 404
T +HA +H++K+K Y AS + A G
Sbjct: 108 TLLSHADGKKHRAKAKAYHASQKQANG 134
>12_02_1052 -
25698263-25698394,25698587-25698679,25698945-25698995,
25699074-25699258,25699361-25699407,25699704-25699918
Length = 240
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -3
Query: 280 QRNSTQDR*YHKPXPEEHVDLLVDD---IQWQNTQAIEFLHRTGWTVFMEGAF 131
Q NS + PE H+D+LV+D N + ++F RTG ++ A+
Sbjct: 143 QHNSPSQDMQPRLVPEAHLDVLVEDKCAKNQLNREKVQFQQRTGSRSYIAHAY 195
>03_04_0002 -
16215855-16215999,16216100-16216157,16216262-16216521,
16217171-16217273,16217556-16217676
Length = 228
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 310 PRXSLLAARTQSPCATRANRSRIPQATDRRLVRFVPTREE 429
P +L A+ +P R N + +PQA L RF+ R++
Sbjct: 141 PASALPVAQANAPKPVRPNAADLPQARKASLHRFLEKRKD 180
>01_06_0337 -
28535265-28535381,28535463-28535573,28535686-28535840,
28536121-28536230,28536607-28536703,28536878-28537031,
28537260-28537313,28537528-28537588,28537915-28537984,
28538079-28538163,28538325-28538423,28538553-28538639
Length = 399
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Frame = +2
Query: 359 EQIEAVSRKLQIGDWFVLY-QLGKNI----DPLIYKE 454
EQ V RKLQ+ D FVL GKN+ P YK+
Sbjct: 267 EQFRKVGRKLQLIDGFVLLSDAGKNVIISNQPYFYKK 303
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,742,863
Number of Sequences: 37544
Number of extensions: 263358
Number of successful extensions: 702
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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