Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31743
(388 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 31 0.083
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 30 0.11
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 30 0.15
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 28 0.59
SPCC417.02 |dad5|hsk3, hos3|DASH complex subunit Dad5|Schizosacc... 27 0.78
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 27 1.0
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 1.8
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch... 26 1.8
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 26 2.4
SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomy... 26 2.4
SPBC1604.10 |srb7|med21|mediator complex subunit Srb7 |Schizosac... 25 3.1
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 25 3.1
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 25 4.1
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 25 4.1
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 25 5.5
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc... 25 5.5
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 5.5
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 5.5
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 5.5
SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces... 24 7.2
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 24 7.2
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 7.2
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 24 7.2
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 24 7.2
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 24 9.6
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot... 24 9.6
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 24 9.6
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 30.7 bits (66), Expect = 0.083
Identities = 23/89 (25%), Positives = 46/89 (51%)
Frame = +1
Query: 112 RLR*NRNWLSSPPTTMRSPRELRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSL 291
RLR + + +SSP T ++ + DE+ R+ + + + L E+ ++ +++ S
Sbjct: 137 RLRGSLDTVSSPSKTHKANK-----DEKATRLHLIIANLKKALKEKDAEVLNLQSHVSSK 191
Query: 292 EIEVKNISVRLEEVEANAIVGGKRIISKL 378
E E+ ++LE E+N V + + SKL
Sbjct: 192 ESELDRFKIKLETEESNWKVRLQVLESKL 220
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 30.3 bits (65), Expect = 0.11
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = +1
Query: 181 IADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIEVKNISVRL--EEVEANAIVG 354
+A RY V+ E + EHL QE+ I++V K++ ++ ++ +RL + E N ++
Sbjct: 359 MAASRYDTVKREKERLSEHLKSLQEQYEHIQSVYKNVLLDRESYIMRLGNKISENNELLN 418
Query: 355 GKRIISK 375
R++ +
Sbjct: 419 ENRVLKE 425
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 29.9 bits (64), Expect = 0.15
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +3
Query: 6 YEQALRVKRSVEQQYEESQTRVNELTVINVNLSSSKAKIEQELAIVAADYDEITK 170
YE K+S+E+ QT ++ L+ ++ L + I+++ +++ Y E+ K
Sbjct: 918 YEFLYAEKQSIEEDLANKQTEISYLSDLSSTLEKKLSSIKKDEQTISSKYKELEK 972
Score = 26.2 bits (55), Expect = 1.8
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 172 ELRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIEVKNI 312
++ IADE+Y+ + E + E L +Q I + + +LE ++ +I
Sbjct: 910 QVTIADEKYEFLYAEKQSIEEDLANKQTEISYLSDLSSTLEKKLSSI 956
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 27.9 bits (59), Expect = 0.59
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +1
Query: 142 SPPTTMRSPRELRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIEV 303
SP + +++++ D RY++ +EL+ + E ERI E L+++V
Sbjct: 807 SPASVETCDKQVQLEDTRYRQHLSELESLNQRFTEISERIPSAELEISKLQLDV 860
>SPCC417.02 |dad5|hsk3, hos3|DASH complex subunit
Dad5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 94
Score = 27.5 bits (58), Expect = 0.78
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +1
Query: 124 NRNWLSSP-PTTMRSPRELRIADERYQRVQTELKHTVEHLHE---EQERIVKIEAVKKSL 291
+R SSP P+ M+S + R+ D+ ++Q+ + H HLH + E I ++ A++ SL
Sbjct: 10 SRTSSSSPSPSQMKSFQMNRLVDQ-LSKLQSNMSHLENHLHVTAIQAEAIRRLGALQASL 68
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 27.1 bits (57), Expect = 1.0
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +1
Query: 220 KHTVEHLHEEQERIVKIEAVKKSLEIEVKNISVRLEEVEANAIVGGKRIISKLE 381
+ V LH ++ RI + VK+ + ++ + S+R + +A G I S LE
Sbjct: 432 ERVVYELHRDENRIPALPEVKQIIRVDDPSPSIRQGRKKRHAKRSGVEIKSNLE 485
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 1.8
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 139 SSPPTTMRSPRELRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKS 288
SS ++ S E+ + E + +E + E EE+E +VKIE K+S
Sbjct: 114 SSESSSSESEEEVIVKTEEKKESSSESSSSSES-EEEEEAVVKIEEKKES 162
>SPBC577.05c |rec27|mug41|meiotic recombination protein
Rec27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 26.2 bits (55), Expect = 1.8
Identities = 12/47 (25%), Positives = 29/47 (61%)
Frame = +1
Query: 169 RELRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIEVKN 309
+++ ++ + + + + ++ L+EE+ + IEA K+ LEIE++N
Sbjct: 66 KDVSQVQQKIKEFEIQKANQIKQLNEEK---LSIEARKQQLEIEIRN 109
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 25.8 bits (54), Expect = 2.4
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 181 IADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIEVKNISVRLEEVEANA 345
++DE Y ++T + HL E V+ SLE V ++ RL A A
Sbjct: 333 LSDEEYHMLRTAAIKIIRHLGVVGECNVQYALSPNSLEYRVIEVNARLSRSSALA 387
>SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 25.8 bits (54), Expect = 2.4
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 130 NWLSSPPTTMRSPRELRIADERYQRVQTELKHTVEHLH 243
N L S PT R L E+ + +E KH + H H
Sbjct: 233 NHLESQPTDSIDLRHLEQTSEQNETDNSERKHLLSHQH 270
>SPBC1604.10 |srb7|med21|mediator complex subunit Srb7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 25.4 bits (53), Expect = 3.1
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 205 VQTELKHTVEHLHEEQERIVKIEAVKKSLEIEVKNISVRL 324
+ T KH +E + + Q I + + +KSLE E +++ ++L
Sbjct: 82 ISTAPKHQLEKIKKLQNSIEEKQLERKSLESENEDLKLQL 121
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 3.1
Identities = 12/56 (21%), Positives = 28/56 (50%)
Frame = +1
Query: 214 ELKHTVEHLHEEQERIVKIEAVKKSLEIEVKNISVRLEEVEANAIVGGKRIISKLE 381
+LK + H E+Q+ + K + ++K+ + E++ + + E + +IS E
Sbjct: 401 QLKSRIAHFKEQQDSVTK-QRIEKAKQ-EIEKLEAKYNSKEEKTLTEADMVISSEE 454
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 25.0 bits (52), Expect = 4.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 247 PHADARQCVSAQSVRAGISH 188
PHAD+++C + QS+ SH
Sbjct: 201 PHADSQECPTPQSLLMRASH 220
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 25.0 bits (52), Expect = 4.1
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 12 QALRVKRSVEQQYEESQTRVNELT 83
+++R KRS++ YE S + N++T
Sbjct: 87 KSIRRKRSIDNDYELSNVKRNDIT 110
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 3 NYEQALRVKRSVEQQYEESQTRVNEL 80
NY++ L R +E ++ ESQ V EL
Sbjct: 820 NYDELLTRYRELEGKFLESQAEVEEL 845
>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 24.6 bits (51), Expect = 5.5
Identities = 12/46 (26%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 9 EQALRVKRSVEQQYEESQTRVNELTVI-NVNLSSSKAKIEQELAIV 143
E+ +K V++QYE+ Q + N+L + +++ S+ +E+ ++ V
Sbjct: 96 EEIELIKPIVKEQYEQYQCQKNDLDDLKKLSMKDSQPSLEKPVSYV 141
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 24.6 bits (51), Expect = 5.5
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Frame = -3
Query: 386 PPSSLLMIRLPPTIALASTSSRRTEMFLTSISRDFLTASILTI--LSCSSCRCSTVCFSS 213
P SS L + +LAS+S+ + + +SI+ L +S +T L+ SS S++ SS
Sbjct: 104 PTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSS 163
Query: 212 V---CTRWYLSSAMRSSLGDLIVVGGDDSQFLFYLSL 111
+ SSA SSL S L SL
Sbjct: 164 TNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSL 200
Score = 24.2 bits (50), Expect = 7.2
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = -3
Query: 380 SSLLMIRLPPTIALASTSSRRTEMFLTSISRDFLTASILTILSCSSCRCSTVCFSSVCTR 201
SSL T + TSS + ++ + + T+S L S +S +T SS+ +
Sbjct: 157 SSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSST 216
Query: 200 WYLSSAMRSSL 168
+SA SSL
Sbjct: 217 AASNSATSSSL 227
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 24.6 bits (51), Expect = 5.5
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -3
Query: 305 LTSISRDFLTASILTILSCSSCRCSTVCFSSVCTRWY-LSSAMRSSLGDLI 156
LT++ D + +L SC C F+ +C+ + LSS++R+ + DL+
Sbjct: 33 LTAVVNDVIDTLLLGTSSCFDEDCLEKLFA-ICSHFADLSSSVRNKVYDLL 82
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 24.6 bits (51), Expect = 5.5
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = -3
Query: 383 PSSLLMIRLPPTIALASTSSRRTEMFL----TSISRDFLTASILTILS 252
P+S + I PP+ AL S +S T + + +S F TA + TI+S
Sbjct: 695 PASPVEITEPPSSALVSATSPTTNVPIVPEAVHLSTAFSTAPVSTIVS 742
>SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 114
Score = 24.2 bits (50), Expect = 7.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 190 ERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLE 294
++YQ +QTEL VE L + + ++ + V LE
Sbjct: 6 KKYQNLQTELSTYVESLKKLETQLQENTTVLNELE 40
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 24.2 bits (50), Expect = 7.2
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = +1
Query: 169 RELRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIEVKNISVRLEEV 333
R++ + +E + L+ T E + + + E +SLE E ++ +LEE+
Sbjct: 86 RKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLERERDDMEQKLEEM 140
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 24.2 bits (50), Expect = 7.2
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = -3
Query: 386 PPSSLLMIRLPPTIALASTSSRR---TEMFLTSISRDFLTASILTILSCSSCRCSTVCFS 216
P SS M+ A++S+SS + F + S F+T+ + + SS +++ S
Sbjct: 42 PSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSS 101
Query: 215 SVCTRWYLSSAMRSS 171
S T SSA +S
Sbjct: 102 SSATLTSSSSASPTS 116
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 24.2 bits (50), Expect = 7.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 190 ERYQRVQTELKHTVEHLHEEQERIV 264
+R+ Q ELK + L EE+E+++
Sbjct: 371 QRWNDAQKELKDNIPDLSEEEEKLL 395
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 24.2 bits (50), Expect = 7.2
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +1
Query: 130 NWLSSPPTTMRSPRELRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIEVKN 309
N+L+ S + LR ER + V TEL+ +E L + + K+ LE +++
Sbjct: 1227 NYLNMVALLNESNKSLRENLERNEEVITELREKIETLKTD---LANFRLNKEQLESQLQT 1283
Query: 310 ISVRLEEVE 336
++++E
Sbjct: 1284 EKAAVKKLE 1292
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 23.8 bits (49), Expect = 9.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 9 EQALRVKRSVEQQYEESQTRVNELTVINVNLSSSKAKIE 125
EQ R + ++YE ++R +EL L KAK E
Sbjct: 453 EQVEEETRPIREKYELEKSRGSELQDAKRRLDELKAKAE 491
>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
Sin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 23.8 bits (49), Expect = 9.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 93 VNLSSSKAKIEQELAIVAADYDEI 164
VNL+SSK + + V+ DYD++
Sbjct: 168 VNLTSSKQSSINQQSSVSTDYDDL 191
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 23.8 bits (49), Expect = 9.6
Identities = 12/56 (21%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +1
Query: 175 LRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIEVK---NISVRLEEV 333
L + Y + + + + E+ + ++ +KK LEIE++ + S++ EE+
Sbjct: 1267 LSLIKANYDEFSSTVDDFLFRFSKATEQCLMVKYIKKDLEIEIEESCDFSIQTEEI 1322
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,184,651
Number of Sequences: 5004
Number of extensions: 17635
Number of successful extensions: 113
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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