Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31743
         (388 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    23   1.6  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    23   1.6  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    23   1.6  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    23   1.6  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   1.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   2.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   2.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   4.9  

>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 169 RELRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIE 300
           RE R  D RY+++  E +  +E     +      E  KKS + E
Sbjct: 10  REYREKDRRYEKLHNEKEKLLEERTSRKRYSRSREREKKSYKNE 53


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 169 RELRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIE 300
           RE R  D RY+++  E +  +E     +      E  KKS + E
Sbjct: 10  REYREKDRRYEKLHNEKEKLLEERTSRKRYSRSREREKKSYKNE 53


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 169 RELRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIE 300
           RE R  D RY+++  E +  +E     +      E  KKS + E
Sbjct: 10  REYREKDRRYEKLHNEKEKLLEERTSRKRYSRSREREKKSYKNE 53


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 169 RELRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIE 300
           RE R  D RY+++  E +  +E     +      E  KKS + E
Sbjct: 10  REYREKDRRYEKLHNEKEKLLEERTSRKRYSRSREREKKSYKNE 53


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 169 RELRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIE 300
           RE R  D RY+++  E +  +E     +      E  KKS + E
Sbjct: 243 REYREKDRRYEKLHNEKEKLLEERTSRKRYSRSREREKKSYKNE 286


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 317 TEMFLTSISRDFLT 276
           TE FLT+ S DFLT
Sbjct: 199 TEGFLTTCSFDFLT 212


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 317 TEMFLTSISRDFLT 276
           TE FLT+ S DFLT
Sbjct: 199 TEGFLTTCSFDFLT 212


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -3

Query: 272 SILTILSCSSCRCSTVCFSSVCTRWY 195
           + L + S    RCS  C ++   RW+
Sbjct: 7   AFLPVKSFRESRCSVRCSAASGLRWF 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,368
Number of Sequences: 438
Number of extensions: 1459
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)