Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31743
(388 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g48670.2 68416.m05314 XH/XS domain-containing protein / XS zi... 33 0.067
At3g48670.1 68416.m05313 XH/XS domain-containing protein / XS zi... 33 0.067
At1g67230.1 68414.m07652 expressed protein 32 0.12
At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911... 32 0.12
At4g15420.1 68417.m02359 PRLI-interacting factor K nearly identi... 32 0.15
At1g22770.1 68414.m02845 gigantea protein (GI) identical to giga... 29 1.1
At5g60850.1 68418.m07633 Dof-type zinc finger domain-containing ... 29 1.4
At4g36860.2 68417.m05227 LIM domain-containing protein low simil... 28 1.9
At3g12550.1 68416.m01562 XH/XS domain-containing protein / XS zi... 27 3.3
At2g37630.1 68415.m04616 myb family transcription factor (MYB91)... 27 3.3
At1g16190.1 68414.m01939 DNA repair protein RAD23, putative simi... 27 3.3
At5g55860.1 68418.m06963 expressed protein contains Pfam profile... 27 4.4
At4g36270.1 68417.m05158 ATP-binding region, ATPase-like domain-... 27 4.4
At3g17970.1 68416.m02286 chloroplast outer membrane translocon s... 27 4.4
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 27 4.4
At5g60930.1 68418.m07643 chromosome-associated kinesin, putative... 27 5.8
At3g04990.1 68416.m00542 hypothetical protein 27 5.8
At1g77580.2 68414.m09032 myosin heavy chain-related low similari... 27 5.8
At1g77580.1 68414.m09033 myosin heavy chain-related low similari... 27 5.8
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica... 26 7.6
At5g39790.1 68418.m04820 5'-AMP-activated protein kinase beta-1 ... 26 7.6
At4g11420.1 68417.m01840 eukaryotic translation initiation facto... 26 7.6
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea... 26 7.6
At1g26300.2 68414.m03207 BSD domain-containing protein contains ... 26 7.6
At1g26300.1 68414.m03206 BSD domain-containing protein contains ... 26 7.6
>At3g48670.2 68416.m05314 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 647
Score = 33.1 bits (72), Expect = 0.067
Identities = 16/70 (22%), Positives = 39/70 (55%)
Frame = +1
Query: 172 ELRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIEVKNISVRLEEVEANAIV 351
E + ADE +++ + + E LHE+ R+ + K+++E+EV+ + +L ++ A
Sbjct: 387 EQQKADEEVKKLAEDQRRQKEELHEKIIRLERQRDQKQAIELEVEQLKGQLNVMKHMASD 446
Query: 352 GGKRIISKLE 381
G ++ +++
Sbjct: 447 GDAEVVKEVD 456
>At3g48670.1 68416.m05313 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 647
Score = 33.1 bits (72), Expect = 0.067
Identities = 16/70 (22%), Positives = 39/70 (55%)
Frame = +1
Query: 172 ELRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIEVKNISVRLEEVEANAIV 351
E + ADE +++ + + E LHE+ R+ + K+++E+EV+ + +L ++ A
Sbjct: 387 EQQKADEEVKKLAEDQRRQKEELHEKIIRLERQRDQKQAIELEVEQLKGQLNVMKHMASD 446
Query: 352 GGKRIISKLE 381
G ++ +++
Sbjct: 447 GDAEVVKEVD 456
>At1g67230.1 68414.m07652 expressed protein
Length = 1132
Score = 32.3 bits (70), Expect = 0.12
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Frame = +1
Query: 172 ELRIADER---YQRVQTELKHTVEHLHEEQERIVK----IEAVKKSLEIEVKNISVRLEE 330
ELR+ +E Y R+QTELK +E +QE + K ++A ++S E E + + R +
Sbjct: 475 ELRVTEEERSEYLRLQTELKEQIEKCRSQQELLQKEAEDLKAQRESFEKEWEELDERKAK 534
Query: 331 V 333
+
Sbjct: 535 I 535
Score = 28.3 bits (60), Expect = 1.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 33 SVEQQYEESQTRVNELTVINVNLSSSKAKIEQELAIVAAD 152
S + Q ES+T E+ V NVN ++ I + VAAD
Sbjct: 843 SFDVQKAESETGTKEVEVTNVNSDGDQSDINSKAQEVAAD 882
>At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911:
Plant protein of unknown function (DUF869)
Length = 982
Score = 32.3 bits (70), Expect = 0.12
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Frame = +1
Query: 160 RSPRELRIADERYQRVQTELKHTVEHLH--EEQERIVKIEA--VKKSLEI--EVKNISVR 321
RS +RI++E+ Q ++E++H ++ E + +K E + K LEI E KN+S+R
Sbjct: 199 RSNMLMRISEEKSQ-AESEIEHLKNNIESCEREINTLKYETHVITKELEIRNEEKNMSMR 257
Query: 322 LEEVEANAIVGGKRIISKLE 381
E + G + I+KLE
Sbjct: 258 SAEAANKQHLEGVKKIAKLE 277
>At4g15420.1 68417.m02359 PRLI-interacting factor K nearly identical
to PRLI-interacting factor K [Arabidopsis thaliana]
GI:11139266; contains Pfam profiles PF03152: Ubiquitin
fusion degradation protein UFD1, PF00096: Zinc finger,
C2H2 type
Length = 561
Score = 31.9 bits (69), Expect = 0.15
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +1
Query: 172 ELRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIEVKNISVRLEEVEA 339
ELR A E+ +R Q E K + L E+E+ K A+K+ IE + RL+ +EA
Sbjct: 4 ELRSAKEKLEREQRERKQRAK-LKLEREKKSKEAAIKQREAIEAAQRARRLDAIEA 58
>At1g22770.1 68414.m02845 gigantea protein (GI) identical to gigantea
protein SP:Q9SQI2 from [Arabidopsis thaliana]
Length = 1173
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3
Query: 380 SSLLMIRLPPTIALASTSSRRTEMFLTSISRDFLTASILTI 258
S+LL RLP TI S S TS+ RD + S + I
Sbjct: 1064 SNLLKCRLPATIRCLSHPSAHVRALSTSVLRDIMNQSSIPI 1104
>At5g60850.1 68418.m07633 Dof-type zinc finger domain-containing
protein similar to zinc finger protein OBP4 gi:5059396
from [Arabidopsis thaliana]; EMBL:AF155817
Length = 307
Score = 28.7 bits (61), Expect = 1.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 246 GTGEDRQDRGRQEVS*NRSQEHLCPSGRSRSQRYCWWQAYH 368
G G DR+ R Q N Q CP S + ++C++ Y+
Sbjct: 30 GGGGDRRMRAHQNNILNHHQSLKCPRCNSLNTKFCYYNNYN 70
>At4g36860.2 68417.m05227 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 547
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +3
Query: 27 KRSVEQQYEESQTRVNELTVINVNLSSSKAKIEQELAIVAADYDEITKGTPHR 185
KR E Q EE++ + + + + SKA++E++ + A + + G+P R
Sbjct: 117 KRRAEAQLEETEKLLAKARLEEEEMRRSKAQLEEDELLAKALQESMNVGSPPR 169
>At3g12550.1 68416.m01562 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 635
Score = 27.5 bits (58), Expect = 3.3
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +1
Query: 229 VEHLHEEQERIVKIEAV---KKSLEIEVKNISVRLEEVEANAIVGGKRIISKLE 381
V+H + +RI +E K+ LE+EV+ + +L + + G I++K+E
Sbjct: 393 VDHKEKLHKRIAALERQLDQKQELELEVQQLKSQLSVMRLVELDSGSEIVNKVE 446
>At2g37630.1 68415.m04616 myb family transcription factor (MYB91)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 367
Score = 27.5 bits (58), Expect = 3.3
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = +1
Query: 193 RYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIEVKNISVRLEEVEANAIVGGKR 363
R +R++ +L+ E ++E++ +IEA K+L E KN ++E +VG +R
Sbjct: 278 RLRRLELQLES--EKTCRQREKMEEIEAKMKALREEQKNAMEKIEGEYREQLVGLRR 332
>At1g16190.1 68414.m01939 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota]
Length = 368
Score = 27.5 bits (58), Expect = 3.3
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1
Query: 196 YQRVQTELKHTVEHLHEEQERIVKIEAV--KKSLEIEVKNISVRLEEVEANAIV 351
+ + E+ H+V EEQE I ++EA+ +++ IE R EE+ AN ++
Sbjct: 307 FDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLL 360
>At5g55860.1 68418.m06963 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
expression supported by MPSS
Length = 649
Score = 27.1 bits (57), Expect = 4.4
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 214 ELKHTVEHLHEEQERIVKIEAVKKSLEIEVKNISVRLEEVEA 339
E K E L EE++ ++ + +SL+ E+KN+ + +EVEA
Sbjct: 310 EAKGLFEKLVEEEK---SLQELVESLKAELKNVKMEHDEVEA 348
>At4g36270.1 68417.m05158 ATP-binding region, ATPase-like
domain-containing protein low similarity to microrchidia
[Mus musculus] GI:5410255; contains Pfam profile
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein
Length = 625
Score = 27.1 bits (57), Expect = 4.4
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 190 ERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIEVKNISVRLEE 330
E Y + +TEL+ TV +L +E E K + + +L ++ K ++ E+
Sbjct: 567 EEYVKKETELEQTVSNLAKELEE-TKSKCARLALLVDAKRREMQQED 612
>At3g17970.1 68416.m02286 chloroplast outer membrane translocon
subunit, putative similar to Toc64 [Pisum sativum]
GI:7453538; contains Pfam profile PF00515 TPR Domain
Length = 589
Score = 27.1 bits (57), Expect = 4.4
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Frame = +1
Query: 136 LSSPPTTMRSPRELRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVK-KSLE--IEVK 306
L P T R+PR++ +AD+ +Q ++ + + + + E++ + +K ++LE E K
Sbjct: 220 LQLPFATQRNPRQIILADDCFQLLKIPVDRITQVVTKSAEKLFGRQLLKHQNLETYFETK 279
Query: 307 NISVRLEEVEANAIVGGKRIISKL 378
S++ E AI K S+L
Sbjct: 280 VPSLK-EFARTKAIANTKVSTSRL 302
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 27.1 bits (57), Expect = 4.4
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +1
Query: 172 ELRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIEVKNISVRLE 327
E+RI E QR +L+ E + E QE+I + K L V NI LE
Sbjct: 34 EIRILKEESQRTNLDLESVKEKIKENQEKI----KLNKQLPYLVGNIVEILE 81
>At5g60930.1 68418.m07643 chromosome-associated kinesin, putative
microtubule-associated motor KIF4 , Mus musculus,
PIR:A54803
Length = 1294
Score = 26.6 bits (56), Expect = 5.8
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +1
Query: 244 EEQERIVKIEAVKKSLEIEVKNISVRLEEVEA 339
E QE+ ++ ++++ L++E+K + RLEE EA
Sbjct: 539 EFQEKEIEHCSLQEKLDMELKELDKRLEEKEA 570
>At3g04990.1 68416.m00542 hypothetical protein
Length = 227
Score = 26.6 bits (56), Expect = 5.8
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = +1
Query: 115 LR*NRNWLSSP-PTTMRSPRELRIADERYQRVQTELKHTVEHLHEEQERIVKIE----AV 279
LR RN L+ + +R REL + D + +V ELK Q+R ++E
Sbjct: 81 LRSKRNLLTVKLDSLIRVQRELELKDNQLVQVMAELKRRYSEARHVQKRKREMEDETATK 140
Query: 280 KKSLEIEVKNISVRLEEVE 336
KK L + V I +++E
Sbjct: 141 KKELSMTVDQIQESGKQLE 159
>At1g77580.2 68414.m09032 myosin heavy chain-related low similarity
to SP|P08799 Myosin II heavy chain, non muscle
{Dictyostelium discoideum}
Length = 779
Score = 26.6 bits (56), Expect = 5.8
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +1
Query: 211 TELKHTVEHLHEEQERIVKIEAVKKSLEIEVK-NISVRLEEVEANAIVGG--KRIISKLE 381
+E++ + E +E++ K+EA K LE EVK N + +E + ++ K + KLE
Sbjct: 343 SEIEVLTSRIKELEEKLEKLEAEKHELENEVKCNREEAVVHIENSEVLTSRTKELEEKLE 402
>At1g77580.1 68414.m09033 myosin heavy chain-related low similarity
to SP|P08799 Myosin II heavy chain, non muscle
{Dictyostelium discoideum}
Length = 629
Score = 26.6 bits (56), Expect = 5.8
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +1
Query: 211 TELKHTVEHLHEEQERIVKIEAVKKSLEIEVK-NISVRLEEVEANAIVGG--KRIISKLE 381
+E++ + E +E++ K+EA K LE EVK N + +E + ++ K + KLE
Sbjct: 309 SEIEVLTSRIKELEEKLEKLEAEKHELENEVKCNREEAVVHIENSEVLTSRTKELEEKLE 368
>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1277
Score = 26.2 bits (55), Expect = 7.6
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = +1
Query: 148 PTTMRSPRELRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIEVKNISVRLE 327
PT +R + ++ +++E +T H+ E +K+EAVK S ++E S +
Sbjct: 312 PTPLRVVKPEKLDTPEVIDLESEKSYT--HVKMEPVEEIKVEAVKMSSQVEDVKFSREQK 369
Query: 328 EVEANAIVGGKRIISKLEGG 387
V G R + K+E G
Sbjct: 370 SVYVKKEPVGARKV-KVEDG 388
>At5g39790.1 68418.m04820 5'-AMP-activated protein kinase beta-1
subunit-related contains similarity to Swiss-Prot:P80387
5'-AMP-activated protein kinase, beta-1 subunit (AMPK
beta-1 chain) (AMPKb) (40 kDa subunit) [Sus scrofa]
Length = 273
Score = 26.2 bits (55), Expect = 7.6
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = +1
Query: 142 SPPTTMRSPRELRIADERYQRVQ--TELKHTVEHLHEEQERIVKIEAVKKSLEIEVKNIS 315
S P T + L I ER + V+ +E L ++ I I+ +E+EV+ +
Sbjct: 81 SRPLTSDELKSLLIDTERSKLVKKLSEANQQNRFLKRQEHEITNIKTELALMELEVQALV 140
Query: 316 VRLEEVEANAIVGGKRIIS 372
EE+ I G R IS
Sbjct: 141 KLAEEIANLGIPQGSRKIS 159
>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
eukaryotic translation initiation factor 3 subunit 10
(eIF-3 theta) (Eukaryotic translation initiation factor
3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
SWISS-PROT:Q9LD55
Length = 987
Score = 26.2 bits (55), Expect = 7.6
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +1
Query: 175 LRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKS 288
L+I +ER +++Q E + + EE ER+ K+EA +K+
Sbjct: 797 LKIEEERIRKLQEEEEARKQ---EEAERLKKVEAERKA 831
>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400); low
similarity (47%) to Agamous-like MADS box protein AGL5
(SP:P29385) {Arabidopsis thaliana}
Length = 892
Score = 26.2 bits (55), Expect = 7.6
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 229 VEHLHEEQERIVKIEAVKKSLEIEVKNISV 318
VEH HEE ERI ++A +K + NI++
Sbjct: 163 VEHDHEEDERISSLKA-RKRRKTSANNINL 191
>At1g26300.2 68414.m03207 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 213
Score = 26.2 bits (55), Expect = 7.6
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 21 RVKRSVEQQYEESQTRVNELTVINVNLSSSKAKIEQELAIVAA 149
R K E+ ++SQT + VNL + AK +ELA+ A+
Sbjct: 7 RAKSFAEEAGKKSQTITQSSSATFVNLVTETAKKSKELALEAS 49
>At1g26300.1 68414.m03206 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 316
Score = 26.2 bits (55), Expect = 7.6
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 21 RVKRSVEQQYEESQTRVNELTVINVNLSSSKAKIEQELAIVAA 149
R K E+ ++SQT + VNL + AK +ELA+ A+
Sbjct: 7 RAKSFAEEAGKKSQTITQSSSATFVNLVTETAKKSKELALEAS 49
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,474,718
Number of Sequences: 28952
Number of extensions: 102309
Number of successful extensions: 548
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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