Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31738
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.15 |tfb5||transcription factor TFIIH complex subunit T...    41   1e-04
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   5.1  
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ...    25   5.1  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    25   8.9  

>SPBC32F12.15 |tfb5||transcription factor TFIIH complex subunit Tfb5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 68

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
 Frame = +3

Query: 48  MVNVMKGVL-VECDPAMKQFLLHLDETLALGRKFILQDLDETHLFISADIXETLQARVDD 224
           M    KG+L VECDP +KQ +L++DE        +++++DE  L ++    E ++A ++ 
Sbjct: 1   MPRAQKGLLLVECDPTVKQLILNMDEQ---SPGIVIEEIDEERLLVNESRLEQVKAELER 57

Query: 225 LMDQLSIPVHD 257
            +++ +  V +
Sbjct: 58  RLEENTYQVEE 68


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = -3

Query: 490 FFLVGFSLESANFGTFFDITKSACGSS*KLSCSRASTAFLARRFLATSSKTFLLSASLTL 311
           F++VG    S+  G+ F    +   S      + AST+  +     T++ T   SA+ + 
Sbjct: 111 FYIVGGEGISSTTGSTFQSMTTFTSSQTNSGHASASTSIPSTAITVTANSTIYSSATSSF 170

Query: 310 PDSREV 293
           P S +V
Sbjct: 171 PYSTDV 176


>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
           subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 96  KQFLLHLDETLALGRKFILQDLDETHLFISADIXETLQARVD 221
           KQF    D    +     LQD DE   F + DI ++ +A+ D
Sbjct: 303 KQFFTRSDLENRIWTAPFLQDSDEIRFFENIDIFDSTKAKQD 344


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 244 YPCTIKDYKLRVATSK 291
           YPCT +D +LR AT +
Sbjct: 144 YPCTYQDCELRFATKQ 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,033,158
Number of Sequences: 5004
Number of extensions: 38458
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)