Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31738
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31397| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   7e-05
SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27)        28   5.3  
SB_7681| Best HMM Match : Annexin (HMM E-Value=0)                      28   5.3  
SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0)                 28   5.3  
SB_54009| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_55591| Best HMM Match : TIL (HMM E-Value=4.2e-09)                   27   6.9  
SB_25806| Best HMM Match : DUF159 (HMM E-Value=0.37)                   27   9.2  

>SB_31397| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 44.0 bits (99), Expect = 7e-05
 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +3

Query: 300 RESGRVKDAERRKVXXXXXXXXXXXXXXXXXXQDNFHEDPHADLVM---SKKVPKFADSN 470
           RESGR+KDA  RK+                   DNF EDPHA L +     ++P F D+ 
Sbjct: 6   RESGRIKDAATRKILDTATRRRRQKRQLESLENDNFQEDPHAHLTVLQNKMRIPAFKDTM 65

Query: 471 EKPTR 485
           E  +R
Sbjct: 66  EVLSR 70


>SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27)
          Length = 228

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 432 VMSKKVPKFADSNEKPTRKKKSKSAE 509
           V+S K PK   +  KPT+ KKSK+AE
Sbjct: 204 VVSTKKPK-KSAGAKPTKSKKSKTAE 228


>SB_7681| Best HMM Match : Annexin (HMM E-Value=0)
          Length = 426

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 399 DNFHEDPHADLVMSKKVPKFADSNEKPTRKKKS 497
           DN  E   AD+ M+ +  +   S E PT +KKS
Sbjct: 228 DNQAETKRADIAMNGEEEQIDSSRESPTHEKKS 260


>SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 1256

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 96  KQFLLHLDETLALGRKFILQDLDE 167
           K F  HL++ L+LGR  +++D+ E
Sbjct: 300 KYFRTHLEDALSLGRPLLIEDVGE 323


>SB_54009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 144 TFYQVQEFHPSVVRIVSLPDHIQRGHLSLHSPWFIVLELV 25
           ++Y   + +P  +  +  P HI    L++H  ++++LELV
Sbjct: 225 SWYLFPQIYPGDLLAIDFPTHICLLILTIHFLYYVILELV 264


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 96   KQFLLHLDETLALGRKFILQDLDE 167
            K F  HL+++L+LGR  +++D+ E
Sbjct: 4115 KYFRNHLEDSLSLGRPMLIEDVGE 4138


>SB_55591| Best HMM Match : TIL (HMM E-Value=4.2e-09)
          Length = 133

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 23  VTSSKTMNHGECNERCPR 76
           VT    M H ECN  CPR
Sbjct: 55  VTCPSGMEHSECNSACPR 72


>SB_25806| Best HMM Match : DUF159 (HMM E-Value=0.37)
          Length = 563

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 96  KQFLLHLDETLALGRKFILQDLDE 167
           K F  H+++ L+LGR  I++D+ E
Sbjct: 244 KYFRNHMEDALSLGRPLIIEDVGE 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,930,233
Number of Sequences: 59808
Number of extensions: 278886
Number of successful extensions: 3764
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3763
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)