Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31738
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024819-2|AAF59588.1|   71|Caenorhabditis elegans Hypothetical ...    78   3e-15
AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.     29   1.5  
AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated...    29   1.5  
AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated...    29   1.5  
Z70204-1|CAA94111.1|  643|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z82264-12|CAB05161.2|  300|Caenorhabditis elegans Hypothetical p...    28   3.4  
Z73898-9|CAA98066.2|  913|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z48230-4|CAO78721.1|  484|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z48230-3|CAA88263.1|  515|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z48006-7|CAO78729.1|  484|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z48006-6|CAA88051.1|  515|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U97190-1|AAB52366.2|  495|Caenorhabditis elegans Cop-9 signaloso...    27   8.0  

>AC024819-2|AAF59588.1|   71|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.2 protein.
          Length = 71

 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 35/71 (49%), Positives = 51/71 (71%)
 Frame = +3

Query: 48  MVNVMKGVLVECDPAMKQFLLHLDETLALGRKFILQDLDETHLFISADIXETLQARVDDL 227
           MVNV KGVLV  DPA +Q L+HLD++  LG KFI+++LD+THLFI  +I   L+ +V+ +
Sbjct: 1   MVNVKKGVLVTSDPAFRQLLIHLDDSRQLGSKFIVRELDDTHLFIEKEIVPMLENKVEQI 60

Query: 228 MDQLSIPVHDK 260
           M+ ++    DK
Sbjct: 61  MENMNPEAVDK 71


>AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.
          Length = 468

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 399 DNFHEDPHADLVMSKKVPKFADSNEKPTRKKKS 497
           DN ++DPH  L+     P F D N+     +K+
Sbjct: 131 DNVYQDPHQHLMHIHSAPNFHDENQNAANFRKT 163


>AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated
           protein 34, isoform b protein.
          Length = 310

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 399 DNFHEDPHADLVMSKKVPKFADSNEKPTRKKKS 497
           DN ++DPH  L+     P F D N+     +K+
Sbjct: 117 DNVYQDPHQHLMHIHSAPNFHDENQNAANFRKT 149


>AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated
           protein 34, isoform a protein.
          Length = 454

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 399 DNFHEDPHADLVMSKKVPKFADSNEKPTRKKKS 497
           DN ++DPH  L+     P F D N+     +K+
Sbjct: 117 DNVYQDPHQHLMHIHSAPNFHDENQNAANFRKT 149


>Z70204-1|CAA94111.1|  643|Caenorhabditis elegans Hypothetical
           protein C11G6.1 protein.
          Length = 643

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 396 QDNFHEDPHADLVMSKKVPKFADSNEKPTRKKKSKSAEYY 515
           +D F E P + +     +    D  +KP ++K+ KS+E Y
Sbjct: 552 EDQFPEGPSSSVAADTTLEFGEDQEKKPKKEKRDKSSEEY 591


>Z82264-12|CAB05161.2|  300|Caenorhabditis elegans Hypothetical
           protein C49C3.8 protein.
          Length = 300

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 178 NKCVSSRS*RINFLPSARVSSKCSKNCFIAGSHSTRTP 65
           +K V  R  R+N L   R   +CSK  FI+ S  +  P
Sbjct: 150 SKTVPYRKRRMNDLEDLRKIKECSKRAFISNSDQSEVP 187


>Z73898-9|CAA98066.2|  913|Caenorhabditis elegans Hypothetical
           protein ZK822.1 protein.
          Length = 913

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = +1

Query: 301 ANLEESKMPREERFWMMWRENVEREKQLRP*NKITFMKTHMQI*LCQRRCRNSQTLMRNQ 480
           A +EE KM R  R     RE  +++ +L+        K  MQ+    RRC  S+ L R  
Sbjct: 347 AEIEEMKM-RNNRLVEQLREKSQQQSKLQ----CQLHKAEMQVNALSRRCALSEALDRLT 401

Query: 481 LGRRSLKA 504
           L  R  K+
Sbjct: 402 LDERMEKS 409


>Z48230-4|CAO78721.1|  484|Caenorhabditis elegans Hypothetical
           protein F19C6.4b protein.
          Length = 484

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/74 (20%), Positives = 35/74 (47%)
 Frame = -3

Query: 493 FFFLVGFSLESANFGTFFDITKSACGSS*KLSCSRASTAFLARRFLATSSKTFLLSASLT 314
           F F++  +  S +F    DI+KS C       C++ + +     F   + +  +L  ++T
Sbjct: 5   FIFIIVLTTVSQSFHKSIDISKSPCNDFYDYVCAKDTRSISNLTFTKMNQELEILKPNVT 64

Query: 313 LPDSREVILM*QLV 272
           + ++   I + ++V
Sbjct: 65  IENNGTFIALDKIV 78


>Z48230-3|CAA88263.1|  515|Caenorhabditis elegans Hypothetical
           protein F19C6.4a protein.
          Length = 515

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/74 (20%), Positives = 35/74 (47%)
 Frame = -3

Query: 493 FFFLVGFSLESANFGTFFDITKSACGSS*KLSCSRASTAFLARRFLATSSKTFLLSASLT 314
           F F++  +  S +F    DI+KS C       C++ + +     F   + +  +L  ++T
Sbjct: 5   FIFIIVLTTVSQSFHKSIDISKSPCNDFYDYVCAKDTRSISNLTFTKMNQELEILKPNVT 64

Query: 313 LPDSREVILM*QLV 272
           + ++   I + ++V
Sbjct: 65  IENNGTFIALDKIV 78


>Z48006-7|CAO78729.1|  484|Caenorhabditis elegans Hypothetical
           protein F19C6.4b protein.
          Length = 484

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/74 (20%), Positives = 35/74 (47%)
 Frame = -3

Query: 493 FFFLVGFSLESANFGTFFDITKSACGSS*KLSCSRASTAFLARRFLATSSKTFLLSASLT 314
           F F++  +  S +F    DI+KS C       C++ + +     F   + +  +L  ++T
Sbjct: 5   FIFIIVLTTVSQSFHKSIDISKSPCNDFYDYVCAKDTRSISNLTFTKMNQELEILKPNVT 64

Query: 313 LPDSREVILM*QLV 272
           + ++   I + ++V
Sbjct: 65  IENNGTFIALDKIV 78


>Z48006-6|CAA88051.1|  515|Caenorhabditis elegans Hypothetical
           protein F19C6.4a protein.
          Length = 515

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/74 (20%), Positives = 35/74 (47%)
 Frame = -3

Query: 493 FFFLVGFSLESANFGTFFDITKSACGSS*KLSCSRASTAFLARRFLATSSKTFLLSASLT 314
           F F++  +  S +F    DI+KS C       C++ + +     F   + +  +L  ++T
Sbjct: 5   FIFIIVLTTVSQSFHKSIDISKSPCNDFYDYVCAKDTRSISNLTFTKMNQELEILKPNVT 64

Query: 313 LPDSREVILM*QLV 272
           + ++   I + ++V
Sbjct: 65  IENNGTFIALDKIV 78


>U97190-1|AAB52366.2|  495|Caenorhabditis elegans Cop-9 signalosome
           subunit protein 2 protein.
          Length = 495

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/52 (21%), Positives = 28/52 (53%)
 Frame = +3

Query: 132 LGRKFILQDLDETHLFISADIXETLQARVDDLMDQLSIPVHDKGL*ITSCYI 287
           L +K  +   +  HL + A + + L+A++++    + +P + K + +TS  +
Sbjct: 374 LSQKLKVSQKEVIHLLVDAILDDGLEAKINEESGMIEMPKNKKKMMVTSLVV 425


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,175,511
Number of Sequences: 27780
Number of extensions: 212704
Number of successful extensions: 542
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)