Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31738
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   10.0 
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   10.0 
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   10.0 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   10.0 

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/24 (29%), Positives = 11/24 (45%)
 Frame = -3

Query: 94  IAGSHSTRTPFITFTMVHCFRTCH 23
           ++ S +    F+     HCF  CH
Sbjct: 725 VSASTARSEQFLCRYEAHCFALCH 748


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +1

Query: 319 KMPREERFWMMWRENVEREKQLRP*NKITF 408
           ++P+E+ F   WR N+    +  P   + F
Sbjct: 62  RIPKEQGFLSYWRGNLANVIRYFPTQALNF 91


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +1

Query: 319 KMPREERFWMMWRENVEREKQLRP*NKITF 408
           ++P+E+ F   WR N+    +  P   + F
Sbjct: 62  RIPKEQGFLSYWRGNLANVIRYFPTQALNF 91


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 237  AGPLNRQRELVESPQYQLI 181
            A  LNRQ + V   QYQ++
Sbjct: 1147 ANQLNRQGKQVIQTQYQVV 1165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,444
Number of Sequences: 438
Number of extensions: 2675
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)