Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31738
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12400.1 68414.m01433 expressed protein                             61   4e-10
At2g29050.1 68415.m03531 rhomboid family protein contains PFAM d...    29   1.9  
At3g04490.1 68416.m00476 exportin-related weak similarity to Exp...    28   3.2  
At3g23470.1 68416.m02957 cyclopropane-fatty-acyl-phospholipid sy...    27   5.7  
At3g43680.1 68416.m04657 hypothetical protein                          27   9.9  

>At1g12400.1 68414.m01433 expressed protein
          Length = 71

 Score = 61.3 bits (142), Expect = 4e-10
 Identities = 25/65 (38%), Positives = 42/65 (64%)
 Frame = +3

Query: 48  MVNVMKGVLVECDPAMKQFLLHLDETLALGRKFILQDLDETHLFISADIXETLQARVDDL 227
           MVN +KGV V CD  M QF+++++ ++   +KFI+  LD THLF+   + + +++ + D 
Sbjct: 1   MVNAIKGVFVSCDIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDF 60

Query: 228 MDQLS 242
            DQ S
Sbjct: 61  RDQNS 65


>At2g29050.1 68415.m03531 rhomboid family protein contains PFAM
           domain PF01694, Rhomboid family
          Length = 389

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = -3

Query: 259 LSCTGMLSWSIKSSTRACRVSXISADMN-KCVSSRS*RI----NFLPSARVSSKCSKNC 98
           LSC     WS KS    C  S I   MN  C+++    +    N +PS R+   CS+ C
Sbjct: 331 LSCIPTSLWSCKSQNVYCESSQIGQQMNLTCITNGKTEMYKLSNDIPS-RIQQLCSQLC 388


>At3g04490.1 68416.m00476 exportin-related weak similarity to
           Exportin 4 (Exp4) (Swiss-Prot:Q9ESJ0) [Mus musculus] and
           (Swiss-Prot:Q9C0E2) [Homo sapiens]
          Length = 921

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 168 FHPGLEE*TFYQVQEFHPSVVRIVSLP 88
           F P  +E  FYQV EF PS    + LP
Sbjct: 138 FTPAQKEVFFYQVSEFSPSTSSAMGLP 164


>At3g23470.1 68416.m02957 cyclopropane-fatty-acyl-phospholipid
           synthase family protein similar to cyclopropane synthase
           [Sterculia foetida] GI:21069167; contains Pfam profile
           PF02353: Cyclopropane-fatty-acyl-phospholipid synthase
          Length = 406

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 3   TINYYIK*QVLKQ*TMVNVMKGVLVECDPAMKQFLLHLDETL 128
           ++ YY+K  VLKQ T+    K +    D + + F L +D+T+
Sbjct: 92  SVKYYLK-HVLKQNTLTQARKNISSHYDLSNEFFGLFMDDTM 132


>At3g43680.1 68416.m04657 hypothetical protein
          Length = 539

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 417 PHADLVMSKKVPKFADSNEKPTRKKKSKSAE 509
           P +D  M K+V     S +K ++KKK+ SAE
Sbjct: 244 PASDKAMGKRVRTDDSSCKKKSKKKKASSAE 274


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,419,955
Number of Sequences: 28952
Number of extensions: 194975
Number of successful extensions: 500
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)