Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31737
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 94 1e-20
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 53 2e-08
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 50 2e-07
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 34 0.015
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 34 0.015
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 33 0.033
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 27 1.7
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch... 26 3.8
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 3.8
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 25 6.7
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual 25 6.7
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 94.3 bits (224), Expect = 1e-20
Identities = 48/148 (32%), Positives = 81/148 (54%)
Frame = +2
Query: 62 LPPEQIAVLRKAFDGFDHNRSGSIPCDFVADILRMMGQPFNXXXXXXXXXXXDADKSGRL 241
L EQIA R+AF FD ++ G+I + + ++R +GQ DAD +G +
Sbjct: 6 LTDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTI 65
Query: 242 EFPEFVTLAAKFIVEEDAEAMQKELREAFRLYDKEGNGYIPTSSLREIXXXXXXXXXXXX 421
+F EF+T+ A+ + + D E +E+REAF+++DK+GNGYI L +
Sbjct: 66 DFTEFLTMMARKMKDTDNE---EEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEE 122
Query: 422 XXXXIQEIDTDGSGTVDFDEFMEMMTGE 505
I+E DTDG G ++++EF +++ +
Sbjct: 123 VADMIREADTDGDGVINYEEFSRVISSK 150
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 53.2 bits (122), Expect = 2e-08
Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 5/149 (3%)
Frame = +2
Query: 71 EQIAVLRKAFDGFDHNRSGSIPCDFVADILRMMGQPFNXXXXXXXXXXXDADKSGRLEFP 250
E+I +RK F D N+SGSI + I + P D D G ++F
Sbjct: 21 EEIERIRKRFIKIDANQSGSIDRNEFLSIPSVASNPL----ASRLFSVVDEDGGGDVDFQ 76
Query: 251 EFVTLAAKFIVEEDAEAMQKELREAFRLYDKEGNGYIPTSSL-----REIXXXXXXXXXX 415
EF+ + F V + E ++L+ AF++YD + +GYI L +
Sbjct: 77 EFINSLSVFSVHGNKE---EKLKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQ 133
Query: 416 XXXXXXIQEIDTDGSGTVDFDEFMEMMTG 502
I E+D D G + F+EF ++++G
Sbjct: 134 QIVDKTIMEVDKDRDGKISFEEFKDIVSG 162
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 50.4 bits (115), Expect = 2e-07
Identities = 33/140 (23%), Positives = 66/140 (47%)
Frame = +2
Query: 71 EQIAVLRKAFDGFDHNRSGSIPCDFVADILRMMGQPFNXXXXXXXXXXXDADKSGRLEFP 250
EQ +++AF +D ++ G IP V +LR +G N + + ++
Sbjct: 6 EQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLG--INVTDAELAKLSNELGDA--IDEK 61
Query: 251 EFVTLAAKFIVEEDAEAMQKELREAFRLYDKEGNGYIPTSSLREIXXXXXXXXXXXXXXX 430
+F++ + + E ++E +E +AFR++DK+ +GYI T+ +
Sbjct: 62 KFMSFVSNKLRETESE---EEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQL 118
Query: 431 XIQEIDTDGSGTVDFDEFME 490
+QE D SG+ D+ +F++
Sbjct: 119 MVQEADPTNSGSFDYYDFVQ 138
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 33.9 bits (74), Expect = 0.015
Identities = 29/136 (21%), Positives = 55/136 (40%)
Frame = +2
Query: 89 RKAFDGFDHNRSGSIPCDFVADILRMMGQPFNXXXXXXXXXXXDADKSGRLEFPEFVTLA 268
++AF FD + +G IP + D+LR GQ A+ +F + +
Sbjct: 9 KQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLPAEVDME-QFLQVLNRP 67
Query: 269 AKFIVEEDAEAMQKELREAFRLYDKEGNGYIPTSSLREIXXXXXXXXXXXXXXXXIQEID 448
F + D E E + F+++DK+ G I LR + ++ +
Sbjct: 68 NGFDMPGDPE----EFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVP 123
Query: 449 TDGSGTVDFDEFMEMM 496
G V++ +F++M+
Sbjct: 124 VK-DGMVNYHDFVQMI 138
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 33.9 bits (74), Expect = 0.015
Identities = 16/71 (22%), Positives = 32/71 (45%)
Frame = +2
Query: 287 EDAEAMQKELREAFRLYDKEGNGYIPTSSLREIXXXXXXXXXXXXXXXXIQEIDTDGSGT 466
E E ++++ EAF+L+D + + I LR +++ D G G
Sbjct: 30 EITEEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGY 89
Query: 467 VDFDEFMEMMT 499
+ ++F+ +MT
Sbjct: 90 LQMEDFVRVMT 100
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 32.7 bits (71), Expect = 0.033
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +2
Query: 218 DADKSGRLEFPEFVTLAAKFIVEEDAEAMQKELREAFRLYDKEGNGYIPTSSLREI 385
DADK+G ++F EF+ + V E + +L AF+LYD + NG I + I
Sbjct: 73 DADKNGYIDFKEFICALS---VTSRGE-LNDKLIWAFQLYDLDNNGLISYDEMLRI 124
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2
Query: 308 KELREAFRLYDKEGNGYI 361
+EL+EAF L DK+G+G I
Sbjct: 48 QELKEAFALLDKDGDGNI 65
>SPAC1687.14c |||EF hand family protein, unknown
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 302 MQKELREAFRLYDKEGNGYIPTSSLR 379
M +E EAF L+D GYI LR
Sbjct: 10 MDEEAEEAFDLFDVTHKGYIDFEDLR 35
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 3.8
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 378 ARSSGNWTSS*LTMNSMASSKRSTLTEAAPSTSTSS 485
A ++G+ TSS T + SS S T +A +STSS
Sbjct: 968 ASATGSSTSSIATASVSGSSTSSVATASATDSSTSS 1003
Score = 25.8 bits (54), Expect = 3.8
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 327 SDCTTRKATXTFPRRACARS-SGNWTSS*LTMNSMASSKRSTLTEAAPSTSTSS 485
S T AT + A S +G+ TSS T + SS S T +A +STSS
Sbjct: 989 SSVATASATDSSTSSIAAASVTGSSTSSVATASVTDSSTSSVATASATDSSTSS 1042
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 6.7
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 248 PEFVTLAAKFIVEEDAEAMQKELREAFRLYDKEG 349
PEF AA+ +VEED E + EA + D+EG
Sbjct: 38 PEFSDEAAEALVEEDIEDLD---GEALDVEDEEG 68
>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +3
Query: 369 RACARSSGNWTSS*LTMNSMASSKRSTLTEAAPSTSTSSW 488
R C S +W SS +T + S+R L S + W
Sbjct: 59 RLCKLPSKSWVSSTVTNEKLRESRRLALQAYVQCLSETPW 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,687,093
Number of Sequences: 5004
Number of extensions: 27206
Number of successful extensions: 131
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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