Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31736
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.15 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   0.81 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.3  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.3  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.3  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.3  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.3  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   5.7  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   5.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   7.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   7.5  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    21   10.0 

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = -3

Query: 442 ESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 272
           + ++QQ+R  + ++   LR  E +  V E     GG        G+ D S  ++ T+
Sbjct: 165 QQQQQQQRQQQRQEERRLRPDEIKVEVGEDEFANGGAARDESKAGSTDASTPATVTT 221



 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = -3

Query: 442  ESEEQQERHHKTEQTHSLRQGE 377
            + ++QQ++  + +Q H  R+ E
Sbjct: 1219 QQQQQQQQQQQQQQQHQARERE 1240


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 0.81
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 65  WRQTAFCFYKVRRATTKN 12
           W Q  FC+++   AT KN
Sbjct: 533 WFQNTFCYFRRNAATWKN 550



 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/28 (32%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -3

Query: 463 FLKVNSLESEEQQERHHK-TEQTHSLRQ 383
           F++ +SL  ++QQ++HH+ +   H+  Q
Sbjct: 91  FMQQHSLYLQQQQQQHHQDSSSEHASNQ 118


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 12  VLCCRAPHLI 41
           V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 12  VLCCRAPHLI 41
           V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 12  VLCCRAPHLI 41
           V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 12  VLCCRAPHLI 41
           V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 12  VLCCRAPHLI 41
           V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 12  VLCCRAPHLI 41
           V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 12  VLCCRAPHLI 41
           V+ CRAPH+I
Sbjct: 518 VILCRAPHII 527


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 12  VLCCRAPHLI 41
           V+ CRAPH+I
Sbjct: 518 VILCRAPHII 527


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +3

Query: 159 LLSLHSSLQCGPSRPHRSLRTLTLLPNS 242
           +L ++  L C   +  +S+R +T LP++
Sbjct: 208 MLGIYCRLYCYAQKHVKSIRAVTKLPDT 235


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -3

Query: 445 LESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTS-SGTS 272
           ++S E++ER H   +    R+        EQL  + G+ G+    G    S+++ +G+S
Sbjct: 97  IKSLEERERKHAVHKEQLSREQRFLRRRLEQLTNQTGLHGLHGLHGLHGLSSSAPTGSS 155


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/11 (63%), Positives = 9/11 (81%), Gaps = 1/11 (9%)
 Frame = +3

Query: 129 QQYP-PIHRWY 158
           Q +P P+HRWY
Sbjct: 237 QGFPVPVHRWY 247


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 363 TPFWVSPCLRLW 398
           TPF V P L++W
Sbjct: 183 TPFTVLPLLKVW 194


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 363 TPFWVSPCLRLW 398
           TPF V P L++W
Sbjct: 183 TPFTVLPLLKVW 194


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 415 HKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNT 287
           ++T QTH  +  E   G+  ++  +G V      EGA   S T
Sbjct: 41  YQTLQTHMKKVREQMAGILSRIPEQGVVNWNKIPEGANTTSTT 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,054
Number of Sequences: 438
Number of extensions: 3073
Number of successful extensions: 18
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)