Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31734
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    27   1.3  
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    27   1.3  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    26   3.8  
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex...    25   5.1  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    25   5.1  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   6.7  
SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom...    25   6.7  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    25   6.7  
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    25   8.9  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   8.9  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    25   8.9  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   8.9  

>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 309 SLKNDVALLRMHAPFNLAEHINMICLPDPGDXFDTSKN 422
           S  N   + R+HA + L +  ++ICL    +  +T KN
Sbjct: 845 SALNSAPIYRLHAAYKLVKAEDIICLSGLREIVETKKN 882


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 106 LNESYAGVGVLIHPQVVMTGAHIAYKYAPGNLRA 207
           L ++   V   IHPQV++ G  IA K A   LRA
Sbjct: 106 LRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRA 139


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -1

Query: 168 SASHDDLRMYQDSY--SSVRFVQSVPAEPQPRGTRRTEPPYP 49
           S + DD     + Y  +S +  ++ PA P   G+  TEPP P
Sbjct: 505 SCTSDDEDSIHEPYRPASTQPTENPPAMPDHNGSPTTEPPKP 546


>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
           subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 95

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +3

Query: 381 CLPDPGDXFD-TSKNCVA 431
           C+P+PG  FD   K+CV+
Sbjct: 49  CIPEPGSTFDPNEKSCVS 66


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1316

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 472  YLPWRPKTSFPQPLATQFLLVSXLSPGSGRQIMLM 368
            ++P+ PKTSFP     Q  L    S  +G ++  M
Sbjct: 1213 WIPFIPKTSFPSLAEIQSRLTYVTSVATGEKVKSM 1247


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -1

Query: 99  PAEPQPRGTRRTEPPYPPLPVMVT 28
           PA P    + R  PPYP  P   T
Sbjct: 343 PAAPTTVSSERNAPPYPSAPTRPT 366


>SPAC12B10.15c |||ribonuclease H2 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +3

Query: 54  TEAQFGEFPWVVALLVRFERIVRWSRSPDTSSSRHDWRSHRLQVRPGQFESKSR*N 221
           +E +  E  W +     FE+++ W+R    SS +  W+   L+    QF SK + N
Sbjct: 91  SEKEIPESTWCINST--FEKVMLWNRDNMRSSEKDQWKRGVLEWI--QFASKVKFN 142


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -1

Query: 204 SQIARGVLVSDVSAS-HDDLRMYQDSYSSVRFVQSVPAEPQPRGTRRTEPPYPPLPVMVT 28
           +QI  G  VS V+ + H D+R  QDS++     Q +P+   P          P L +  +
Sbjct: 383 AQIYDGKDVSMVNDNMHSDVR--QDSFNKESIKQRIPSLSPPITRSYNAKHRPSLVLGTS 440

Query: 27  TDPHGVT 7
            +PH ++
Sbjct: 441 VNPHSLS 447


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 156 DDLRMYQDSYSSVRFVQSVPAEP 88
           D   +YQ S S+V+  ++ PAEP
Sbjct: 492 DSSSIYQTSLSNVKTEETTPAEP 514


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 254 PPSETRRGNNHTRRFQHEKPQ 316
           PP  ++R NN   RF +  PQ
Sbjct: 57  PPFLSKRSNNSPHRFSYSPPQ 77


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 146 GCIRTPTPAYDSFKAYQQSHNPGELAEL 63
           G  +TP PAY S   Y   H   +++ L
Sbjct: 430 GLGKTPQPAYGSSSPYVNGHQTQQISSL 457


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 400 SPGSGRQIMLMCSARLKGACIRRSATSFLRLF 305
           S G    I+ +C   LKG+C R     +L+ F
Sbjct: 882 STGGYENILNICEKYLKGSCSRLEFRKYLQKF 913


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,054,709
Number of Sequences: 5004
Number of extensions: 41860
Number of successful extensions: 155
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)