Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31734
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g14170.1 68418.m01657 SWIB complex BAF60b domain-containing p... 31 0.46
At2g25910.1 68415.m03109 3'-5' exonuclease domain-containing pro... 30 0.80
At1g09860.1 68414.m01110 purine permease-related low similarity ... 30 0.80
At1g21380.1 68414.m02675 VHS domain-containing protein / GAT dom... 30 1.1
At4g26900.1 68417.m03870 imidazole glycerol phosphate synthase h... 29 2.5
At2g26410.1 68415.m03169 calmodulin-binding family protein simil... 29 2.5
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 28 3.2
At2g25450.1 68415.m03048 2-oxoglutarate-dependent dioxygenase, p... 28 3.2
At1g27720.1 68414.m03388 transcription initiation factor IID (TF... 28 4.3
At3g55940.1 68416.m06216 phosphoinositide-specific phospholipase... 27 5.7
At3g07195.1 68416.m00858 proline-rich family protein 27 5.7
At1g67500.1 68414.m07688 DNA polymerase family B protein similar... 27 5.7
At1g49340.2 68414.m05531 phosphatidylinositol 3- and 4-kinase fa... 27 5.7
At1g49340.1 68414.m05530 phosphatidylinositol 3- and 4-kinase fa... 27 5.7
At3g16550.1 68416.m02113 DegP protease, putative contains simila... 27 7.5
At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding ... 27 9.9
At4g03550.1 68417.m00486 glycosyl transferase family 48 protein ... 27 9.9
At3g08510.1 68416.m00988 phosphoinositide-specific phospholipase... 27 9.9
At1g61930.1 68414.m06986 expressed protein contains Pfam profile... 27 9.9
At1g61080.1 68414.m06877 proline-rich family protein 27 9.9
>At5g14170.1 68418.m01657 SWIB complex BAF60b domain-containing
protein similar to brahma associated protein 60 kDa
[Drosophila melanogaster] GI:3378134, SWI/SNF-related,
matrix-associated, actin-dependent regulator of
chromatin D1 [Homo sapiens] GI:4566530; contains Pfam
profile PF02201: BAF60b domain of the SWIB complex
Length = 534
Score = 31.1 bits (67), Expect = 0.46
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 257 PSETRRGNNHTRRFQHEKPQERRGAPADARALQPRR 364
PS T G+ + +RFQ + P GAPA + P R
Sbjct: 97 PSLTTPGSLNMKRFQQKPPMRPPGAPASNNTISPMR 132
>At2g25910.1 68415.m03109 3'-5' exonuclease domain-containing
protein / K homology domain-containing protein / KH
domain-containing protein contains Pfam profiles
PF01612: 3'-5' exonuclease, PF00013: KH domain
Length = 341
Score = 30.3 bits (65), Expect = 0.80
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 126 SSVRFVQSVPAEPQPRGTRRT-EPPYPPLPVMVTTDP 19
SS + VP P+P G T E PP+P+ + TDP
Sbjct: 4 SSPTQLAHVPIPPEPGGRSPTQEANEPPVPIYIVTDP 40
>At1g09860.1 68414.m01110 purine permease-related low similarity to
purine permease [Arabidopsis thaliana] GI:7620007;
contains Pfam profile PF03151: Domain of unknown
function, DUF250
Length = 383
Score = 30.3 bits (65), Expect = 0.80
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +1
Query: 10 NPMGVGSDHHR*GWVRRLSSASSPGLWLC----WYALNESYAGVGVLIHPQVVMTGAHIA 177
NP V + + GW R LS S G+ + YAL + Y G G+L+ Q+++T A
Sbjct: 98 NPETVSNQTNN-GWFRVLSLYVSLGVLVSVYSKLYALGKLYVGWGILLSTQLILTSLFSA 156
Query: 178 Y 180
+
Sbjct: 157 F 157
>At1g21380.1 68414.m02675 VHS domain-containing protein / GAT
domain-containing protein weak similarity to Hrs [Rattus
norvegicus] GI:8547026; contains Pfam profiles PF00790:
VHS domain, PF03127: GAT domain
Length = 506
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 212 PVEWDTQTIKVNAGPPSETRRGNNHTRRFQHEKPQERRGA 331
P W+TQ + PPS + R N FQH PQ A
Sbjct: 402 PAPWETQ--EPRKYPPSMSARTNKRPEYFQHNVPQHSSSA 439
>At4g26900.1 68417.m03870 imidazole glycerol phosphate synthase
hisHF, chloroplast / IGP synthase / ImGPP synthase /
IGPS identical to SP|Q9SZ30 Imidazole glycerol phosphate
synthase hisHF, chloroplast precursor (IGP synthase)
{Arabidopsis thaliana}
Length = 592
Score = 28.7 bits (61), Expect = 2.5
Identities = 20/57 (35%), Positives = 24/57 (42%)
Frame = +2
Query: 191 RAI*EQEPVEWDTQTIKVNAGPPSETRRGNNHTRRFQHEKPQERRGAPADARALQPR 361
RAI E +W + T S RRGN H +F EK E G R L P+
Sbjct: 210 RAIPSDENKDWISSTCNYGESFISSIRRGNVHAVQFHPEKSGE-VGLSVLRRFLHPK 265
>At2g26410.1 68415.m03169 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 516
Score = 28.7 bits (61), Expect = 2.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 108 QSVPAEPQPRGTRRTEPPYPPLP 40
++ P +P P R PP PPLP
Sbjct: 38 ETPPVDPSPSSVHRPYPPPPPLP 60
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 133 LLLQRTIRSKRTSRATTQGNSPN*ASVPTPTGDGHY 26
LL Q + S +GN+PN A VPT G G +
Sbjct: 122 LLKQLILNPSFPSHMRVEGNAPNAADVPTLLGSGTF 157
>At2g25450.1 68415.m03048 2-oxoglutarate-dependent dioxygenase,
putative similar to 2A6 (GI:599622) and tomato ethylene
synthesis regulatory protein E8 (SP|P10967)
Length = 359
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -2
Query: 482 YHRVSALETKDVLPPAVGDAVLAGVEXVPRVREADHVDV 366
Y R S L+ D + V V AGV VPR+ HV+V
Sbjct: 5 YDRASELKAFDEMKIGVKGLVDAGVTKVPRIFHNPHVNV 43
>At1g27720.1 68414.m03388 transcription initiation factor IID
(TFIID) component TAF4 family protein contains Pfam
profile PF05236: Transcription initiation factor TFIID
component TAF4 family
Length = 682
Score = 27.9 bits (59), Expect = 4.3
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 174 DVSASHDDLRMYQDSYSSVRFVQSVPAEPQPRGTRRTEPPYPPLP-VMVTTDP 19
D S DDL+M+QDS ++ + +PQPR + + P V T DP
Sbjct: 16 DSKHSEDDLQMFQDS-----LIRDIEEKPQPRYMKLQKMSSKETPWVEKTVDP 63
>At3g55940.1 68416.m06216 phosphoinositide-specific phospholipase C,
putative similar to phosphoinositide specific
phospholipase C GI:857374 from [Arabidopsis thaliana]
Length = 584
Score = 27.5 bits (58), Expect = 5.7
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = -1
Query: 180 VSDVSASHDDLRMYQDSYSS--VRFVQSVPAEPQPRGTRRTEPPYPPL 43
V +S S + L + Y+ VRF Q P+GTR T Y PL
Sbjct: 348 VRRLSLSEEQLEKASEKYAKQIVRFTQRNLLRVYPKGTRITSSNYNPL 395
>At3g07195.1 68416.m00858 proline-rich family protein
Length = 225
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = -1
Query: 138 QDSYSSVRFVQSVPAE---PQPRGTRRTEPPYPPLPVMVTT 25
QD Y S+ ++ P E P P+ RR + P P PV T
Sbjct: 33 QDLYESIEKPETKPQELAPPPPQPARRIQKPEAPKPVKQDT 73
>At1g67500.1 68414.m07688 DNA polymerase family B protein similar to
SP|Q61493 DNA polymerase zeta catalytic subunit (EC
2.7.7.7) {Mus musculus}; contains Pfam profile PF00136:
DNA polymerase family B
Length = 1890
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/56 (23%), Positives = 24/56 (42%)
Frame = -1
Query: 252 PAFTLMVWVSHSTGSCSQIARGVLVSDVSASHDDLRMYQDSYSSVRFVQSVPAEPQ 85
P T + ++H G+CS+ +S + ++ M D Y + PA+ Q
Sbjct: 386 PEITDLQALNHMVGTCSEFPASEQLSPLGEKSEEASMENDEYMKTPTDRDTPAQIQ 441
>At1g49340.2 68414.m05531 phosphatidylinositol 3- and 4-kinase family
protein contains similarity to phosphatidylinositol
4-kinase 230 GI:2326227 from [Homo sapiens], from [Bos
taurus] GI:2198791; contains Pfam profiles PF00454:
Phosphatidylinositol 3- and 4-kinase, PF00613:
Phosphoinositide 3-kinase family, accessory domain
Length = 2028
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 293 FVYDYFLDESHLVVQHLP*WSGCPILPALALKLP 192
FV ++E+ +++Q LP W+ C I AL P
Sbjct: 1535 FVTPKNVEENSVLLQQLPHWAACSITQALEFLTP 1568
>At1g49340.1 68414.m05530 phosphatidylinositol 3- and 4-kinase family
protein contains similarity to phosphatidylinositol
4-kinase 230 GI:2326227 from [Homo sapiens], from [Bos
taurus] GI:2198791; contains Pfam profiles PF00454:
Phosphatidylinositol 3- and 4-kinase, PF00613:
Phosphoinositide 3-kinase family, accessory domain
Length = 2028
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 293 FVYDYFLDESHLVVQHLP*WSGCPILPALALKLP 192
FV ++E+ +++Q LP W+ C I AL P
Sbjct: 1535 FVTPKNVEENSVLLQQLPHWAACSITQALEFLTP 1568
>At3g16550.1 68416.m02113 DegP protease, putative contains
similarity to DegP2 protease GI:13172275 from
[Arabidopsis thaliana]
Length = 491
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 97 WYALN-ESYAGVGVLIHPQVVMTGAHI 174
W LN ESY G G I + ++T AH+
Sbjct: 77 WQTLNQESYGGSGFAIAGKKILTNAHV 103
>At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding
subunit ClpX1 (CLPX) identical to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 579
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 281 NHTRRFQHEKPQERRGAPADARALQP 358
NH +R HE Q+R D+ A +P
Sbjct: 188 NHYKRIYHESSQKRSAGETDSTAAKP 213
>At4g03550.1 68417.m00486 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1780
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +3
Query: 81 WVV-ALLVRFERIVRWSRSPDTSS-SRHDWRS 170
WV+ AL ++ IV W PDTSS +R W +
Sbjct: 308 WVMLALFLQAAIIVAWEEKPDTSSVTRQLWNA 339
>At3g08510.1 68416.m00988 phosphoinositide-specific phospholipase C
(PLC2) identical to phosphoinositide specific
phospholipase C(AtPLC2) GI:857374 [Arabidopsis thaliana]
Length = 581
Score = 26.6 bits (56), Expect = 9.9
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = -1
Query: 180 VSDVSASHDDLRMYQDSYSS--VRFVQSVPAEPQPRGTRRTEPPYPPL 43
V +S S + L + Y+ VRF Q P+GTR T Y PL
Sbjct: 342 VRRLSLSEEQLEKAAEKYAKQIVRFTQHNLLRIYPKGTRVTSSNYNPL 389
>At1g61930.1 68414.m06986 expressed protein contains Pfam profile
PF04520: Protein of unknown function, DUF584
Length = 203
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 455 WSPGQIRGDTEENRNRYG 508
WSP I DT EN YG
Sbjct: 42 WSPAVIHDDTTENEESYG 59
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 99 PAEPQPRGTRRTEPPYPPLPV 37
P P P GT+ PP PP P+
Sbjct: 550 PPPPPPPGTQAAPPPPPPPPM 570
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,238,972
Number of Sequences: 28952
Number of extensions: 243273
Number of successful extensions: 944
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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