Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31731
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09430.1 68416.m01120 hypothetical protein                          27   5.7  
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ...    27   7.5  
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ...    27   7.5  

>At3g09430.1 68416.m01120 hypothetical protein
          Length = 247

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 354 KSNRPKXKTQLNIXTEVKLR-PATKLETIHLSNRPPXPXKEIYSSSEHSXSP 506
           +SNRP    +  I +EVK   P   + T H ++ P       +SS E   SP
Sbjct: 86  ESNRPSKMARSRILSEVKSETPMALVTTAHRNSTPNIINSTKFSSPESYLSP 137


>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
           protein similar to RNA recognition motif-containing
           protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 271

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 148 FTYHYEXEKPKVPYKLXLHV-EPYNIQK 228
           + Y Y  + P+VPY+   H+ +PYN Q+
Sbjct: 194 YYYGYSLQAPRVPYQHHHHLPQPYNPQQ 221


>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
           protein similar to RNA recognition motif-containing
           protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 287

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 148 FTYHYEXEKPKVPYKLXLHV-EPYNIQK 228
           + Y Y  + P+VPY+   H+ +PYN Q+
Sbjct: 194 YYYGYSLQAPRVPYQHHHHLPQPYNPQQ 221


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,138,772
Number of Sequences: 28952
Number of extensions: 122405
Number of successful extensions: 203
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)