Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31728
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6LE35 Cluster: Capsular polysaccharide repeat unit tra...    33   3.9  
UniRef50_Q4RZM6 Cluster: Chromosome 18 SCAF14786, whole genome s...    32   6.8  
UniRef50_Q5CXB4 Cluster: Tra1p-like; C-terminal FAT domain plus ...    32   6.8  

>UniRef50_A6LE35 Cluster: Capsular polysaccharide repeat unit
           transporter; n=1; Parabacteroides distasonis ATCC
           8503|Rep: Capsular polysaccharide repeat unit
           transporter - Parabacteroides distasonis (strain ATCC
           8503 / DSM 20701 / NCTC11152)
          Length = 486

 Score = 33.1 bits (72), Expect = 3.9
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -3

Query: 253 GFFPRIFSYGFTITFFSVRSRSKIPIPSKPAVRNFVPKIQYLLICILNYICFIKF 89
           G F R  S    +  +S  S   + +PS   +++  P ++Y ++ ++N ICF+ F
Sbjct: 246 GLFNRAQSLNHLVVDYSFSSIRGVMLPSLSKLQDDFPAMRYSVLKLINVICFLTF 300


>UniRef50_Q4RZM6 Cluster: Chromosome 18 SCAF14786, whole genome
            shotgun sequence; n=3; Tetraodontidae|Rep: Chromosome 18
            SCAF14786, whole genome shotgun sequence - Tetraodon
            nigroviridis (Green puffer)
          Length = 1558

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = -3

Query: 301  YSLVYATVAPAHVSFNGFFPR--IFSYGFTITFFSVRS 194
            ++ V+   A  H+ F+GF PR  +FS+   ++FFS RS
Sbjct: 1294 FTSVWCISAQCHIRFSGFKPRLLVFSWLLELSFFSCRS 1331


>UniRef50_Q5CXB4 Cluster: Tra1p-like; C-terminal FAT domain plus
           phoshoinositide 3-kinase domain; very large protein;
           n=3; Cryptosporidium|Rep: Tra1p-like; C-terminal FAT
           domain plus phoshoinositide 3-kinase domain; very large
           protein - Cryptosporidium parvum Iowa II
          Length = 5542

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +3

Query: 54  DEILRSINDLSRNLMKQM*FSIQISRYCIFGTKFLTAGLEGIGILLRDRTEKNVIVK 224
           D I++ ++ L+RN++      +    YCI    FL   L+  G +    T++N+I++
Sbjct: 467 DSIMKCLHSLTRNILDTA-LPLPAQHYCIRSAAFLPDILKKEGFVPSSNTQRNIIIR 522


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 389,383,873
Number of Sequences: 1657284
Number of extensions: 6302564
Number of successful extensions: 14981
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14975
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)