Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31728
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    27   1.3  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    27   1.7  
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    26   3.8  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   5.1  
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    25   5.1  
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    25   8.9  

>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 20/66 (30%), Positives = 33/66 (50%)
 Frame = -2

Query: 254 RFFSTDFFLRFYYHIFFSSVAQQNPYPLQACRKELRSKNTIPAYLYTELHLFH*ISRKVI 75
           R+F+ +  LR +Y+ F S +  Q      AC KE+ S+    +YL + L     I  +V+
Sbjct: 336 RYFNCNDRLRSFYYRFSSWLFHQT----LACAKEVESERAPTSYLTSCLPSIKVILARVL 391

Query: 74  DRSQYF 57
           + S  F
Sbjct: 392 ESSPAF 397


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
 Frame = -2

Query: 215 HIFFSSVAQQN-----PYPLQACRKELRSKNTIPAYL 120
           H+F S+ A++      P P+Q CRK +  K   P YL
Sbjct: 169 HLFCSTCAKELRKKTVPCPVQHCRKRITKKFIFPLYL 205


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 254 VK*DVRRRDSRIHKRVVYNTFLFLPLSFRSLIHSFSILRNLL 379
           +K  ++RRD+ +H    ++ +   P     L   +SIL+N+L
Sbjct: 393 IKHQLKRRDAILHSSEYFSKWPIQPEFLPPLSWEYSILKNIL 434


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 275 ACARLI*RFFSTDFFLRFYYHIFFSSVAQQNPY 177
           A  +L+  F   +FFL FY+    +S +  NPY
Sbjct: 602 AIEKLVNFFSMANFFLAFYFVCNATSYSSLNPY 634


>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +2

Query: 95  NETN-VVQYTNKQVLYFWNEVPYGRLGGDRDFAARP 199
           NE N +VQ TN        E+PYG L       ARP
Sbjct: 336 NEKNLIVQKTNPDGSKAMQEIPYGMLVWAAGITARP 371


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 211 FFSVRSRSKIPIPSKPAVRNFVPKIQYLLICILNYICFIKFRE 83
           +F++RS   + + +K      + +I   L  ILN + F+KF E
Sbjct: 122 YFNIRSIKSLSLKNKNWTIISIIEIPIKLHFILNVLLFLKFSE 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,703,502
Number of Sequences: 5004
Number of extensions: 30085
Number of successful extensions: 81
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)