Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31728
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transport...    31   0.37 
AF036705-9|AAO91724.1|  686|Caenorhabditis elegans Hypothetical ...    29   2.0  
U28942-1|AAA68355.2|  441|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z81147-5|CAB03534.1|  663|Caenorhabditis elegans Hypothetical pr...    28   4.6  
CU457743-1|CAM36364.1|  692|Caenorhabditis elegans Hypothetical ...    27   6.0  
U97000-1|AAK68340.1|  115|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AF000198-2|AAB53055.2|  748|Caenorhabditis elegans Hypothetical ...    27   8.0  

>AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transporter
           family protein 4 protein.
          Length = 1802

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -2

Query: 236 FFLRFYYHIFFSSVAQQNPYPL 171
           + L ++++ FFSS+ Q NPYPL
Sbjct: 434 WMLLYFWYAFFSSIDQTNPYPL 455


>AF036705-9|AAO91724.1|  686|Caenorhabditis elegans Hypothetical
           protein F37C4.2 protein.
          Length = 686

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 313 GIIHYSLVYATVAPAHVSFNGFFPRIFSY 227
           G+I  SLVY    P  V+FN  F RI+ +
Sbjct: 176 GVIGLSLVYFYSVPGTVAFNSVFARIWQF 204


>U28942-1|AAA68355.2|  441|Caenorhabditis elegans Hypothetical
           protein F56D3.1 protein.
          Length = 441

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 59  NTAIYQ*PFSKFNETNVVQYTNKQVLYFWNEVPYGRLGGDRDFAARPN*KKCDSKTVRKN 238
           NT   + PF  +++ NVV   N+++L+     PY R GGD+    +        +T R  
Sbjct: 67  NTPNVEDPFGTYDDNNVVSADNEKILFV--PKPY-RPGGDKKEPKKTTQAPTTIRTTRPP 123

Query: 239 P 241
           P
Sbjct: 124 P 124


>Z81147-5|CAB03534.1|  663|Caenorhabditis elegans Hypothetical
           protein T09E11.7 protein.
          Length = 663

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 298 SLVYATVAPAHVSFNGFFPRIFSYGF-TITFFSVRSRSKIP 179
           SL+Y  V+P  VSFN  F R + +    +     R  S IP
Sbjct: 180 SLIYYLVSPPDVSFNSVFARSWQFLIGMVVHLKQRRESSIP 220


>CU457743-1|CAM36364.1|  692|Caenorhabditis elegans Hypothetical
           protein K09E10.1 protein.
          Length = 692

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/65 (21%), Positives = 27/65 (41%)
 Frame = -3

Query: 280 VAPAHVSFNGFFPRIFSYGFTITFFSVRSRSKIPIPSKPAVRNFVPKIQYLLICILNYIC 101
           + P       +F R + YG+     ++       +PSK +  + + +I   LI ++ Y  
Sbjct: 151 IVPLIFLIGSYFSRFYKYGYYFVLGTISFAFNFILPSKVSFNSLLARIWQFLIGMIIYFY 210

Query: 100 FIKFR 86
             K R
Sbjct: 211 STKPR 215


>U97000-1|AAK68340.1|  115|Caenorhabditis elegans Hypothetical
           protein F21F8.5 protein.
          Length = 115

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 308 NTFLFLPLSFRSLIHSF 358
           NTF+FLPL+F  L+ SF
Sbjct: 2   NTFVFLPLAFFVLLESF 18


>AF000198-2|AAB53055.2|  748|Caenorhabditis elegans Hypothetical
           protein T28F2.4a protein.
          Length = 748

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 83  FSKFNETNVVQYTNKQVLYFWNEVPYGRLG 172
           F KF ++NV+    KQ  YF N     RLG
Sbjct: 321 FDKFYQSNVLVVRRKQPTYFGNLFSTARLG 350


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,350,793
Number of Sequences: 27780
Number of extensions: 163474
Number of successful extensions: 406
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)