Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31728
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18150.1 68415.m02112 peroxidase, putative peroxidase [Arabid...    30   0.80 
At1g30370.1 68414.m03713 lipase class 3 family protein similar t...    29   2.5  
At5g66390.1 68418.m08372 peroxidase 72 (PER72) (P72) (PRXR8) ide...    27   7.5  
At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger) fa...    27   7.5  
At2g18090.1 68415.m02103 PHD finger family protein / SWIB comple...    27   9.9  

>At2g18150.1 68415.m02112 peroxidase, putative peroxidase
           [Arabidopsis thaliana] gi|6822093|emb|CAB71009;
           identical to cDNA class III peroxidase ATP36 pseudogene,
           GI:17530548; contains Pfam profile PF00141: Peroxidase
          Length = 338

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +3

Query: 21  NLIRTKXLLSTDEILRSINDLSRNLMKQ 104
           NLI    LL++DE+L S N+ SR L+K+
Sbjct: 269 NLIENMGLLNSDEVLFSSNEQSRELVKK 296


>At1g30370.1 68414.m03713 lipase class 3 family protein similar to
           DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
           GI:16215706; contains Pfam profile: PF01764: Lipase
          Length = 529

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -2

Query: 155 ELRSKNTIPAYLYTELHLFH*ISRK 81
           ++R K+ +P +L T+ HLFH  SRK
Sbjct: 36  KIRVKSHLPGFLSTKKHLFHIKSRK 60


>At5g66390.1 68418.m08372 peroxidase 72 (PER72) (P72) (PRXR8)
           identical to SP|Q9FJZ9 Peroxidase 72 precursor (EC
           1.11.1.7) (Atperox P72) (PRXR8) (ATP6a) {Arabidopsis
           thaliana}
          Length = 336

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +3

Query: 21  NLIRTKXLLSTDEILRSINDLSRNLMK 101
           NLI  K LLS+DEIL + N  S+ L++
Sbjct: 266 NLIMYKGLLSSDEILFTKNKQSKELVE 292


>At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger)
          Length = 359

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 280 VAPAHVSFNGFFPRIFSYGFTITFFSVRSRSKIPIPSKPAV 158
           + P H   +  F  +F   FTITFF+    +   IP  P V
Sbjct: 139 LVPGHHLVSFVFDALFDGSFTITFFAKEEPNCTIIPQFPEV 179


>At2g18090.1 68415.m02103 PHD finger family protein / SWIB complex
           BAF60b domain-containing protein / GYF domain-containing
           protein contains Pfam profiles PF02201: BAF60b domain of
           the SWIB complex, PF02213: GYF domain, PF00628:
           PHD-finger
          Length = 824

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 215 DSKTVRKNPWKKTVK*DVRRR-DSRIHKR 298
           D  T  KNPWK +     +RR  SR+H++
Sbjct: 217 DDLTKAKNPWKSSSSTAAKRRTTSRVHEK 245


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,508,345
Number of Sequences: 28952
Number of extensions: 143331
Number of successful extensions: 376
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)