Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31726
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11680.1 68414.m01341 obtusifoliol 14-demethylase (CYP51) ide...    28   3.2  
At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containi...    28   4.3  
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t...    27   7.5  
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t...    27   7.5  

>At1g11680.1 68414.m01341 obtusifoliol 14-demethylase (CYP51)
           identical to obtusifoliol 14-demethylase (GI:14624983)
           [Arabidopsis thaliana]
          Length = 488

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +3

Query: 12  ALAAETGKYTPFQYNRVYSTVSPFVYKPGRYVADPGRYDPSRDNSGRYIPDNSGAYN 182
           ++ A  GK        + +T   F  +      DP  YDP R + GR     +GA++
Sbjct: 366 SVTARDGKTYDIPKGHIVATSPAFANRLPHIFKDPDTYDPERFSPGREEDKAAGAFS 422


>At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 839

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 19/56 (33%), Positives = 21/56 (37%)
 Frame = -2

Query: 440 AGXAGWDHLAGNVCGCDHLAGNVCGCDWHGNGRLHDGQGNNAGSLVSITKVFAEVL 273
           AG     H  G  CG  H  G   GC   G G    G G + G + S   V A  L
Sbjct: 774 AGYHHGGHHGGGGCGGGHHGGGGGGCGGCGGGGC--GGGGDGGGMTSRAVVAASTL 827


>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 367 PHTLPARWSHPHTLPARWSHPAXPAXTT 450
           PHT P     P + P+  SHP+ P+  T
Sbjct: 100 PHTPPCNCGSPPSHPSTPSHPSTPSHPT 127


>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 367 PHTLPARWSHPHTLPARWSHPAXPAXTT 450
           PHT P     P + P+  SHP+ P+  T
Sbjct: 100 PHTPPCNCGSPPSHPSTPSHPSTPSHPT 127


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,623,615
Number of Sequences: 28952
Number of extensions: 142627
Number of successful extensions: 415
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)