Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31722
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    27   2.2  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    26   3.8  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    25   8.9  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    25   8.9  

>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 354 KGETXEQLYNALHLPQDPALTRKTYQYIMERLKNVNTYAYNQPELKNFXYVYKN 515
           KG T E+L + LH   +   T   YQ +++     N+ +YN    K    ++K+
Sbjct: 479 KGYTIERLIHGLHAVYNDINTEWDYQNLLKGYGAKNSRSYNIHSEKELLDLFKD 532


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 234 GDASSELSTAILQGYIDDXENIAFSPLGYSAILAILAEGAKGE 362
           GD ++ +S A L   + D E + F P G      ++ EG +GE
Sbjct: 267 GDGNAMVSRAGLP--LQDLEFVQFHPTGIYGAGCLITEGCRGE 307


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 476 IVCVSVYIFXSLHDVLVCFSCQSWVLGQMKCIIQL 372
           +VC     F S H + V ++C   VL     II+L
Sbjct: 208 VVCRLFDFFISSHPLTVVYTCAQVVLDNRTSIIEL 242


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 56  NSF*LE-ILKWPVFQHXTVKKKILKKNAPI 142
           +SF +E I KWP+ Q  TV+  + KKN  +
Sbjct: 383 SSFDVEPIRKWPINQILTVEGWLTKKNKKV 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,553
Number of Sequences: 5004
Number of extensions: 37944
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)