Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31722
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1152 + 9170628-9171899 40 0.002
04_04_0619 + 26652923-26653267,26653440-26654273 36 0.015
03_05_0294 + 22855503-22855946,22856346-22856399 36 0.019
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 36 0.026
01_06_0824 - 32243495-32244319,32244449-32244859 36 0.026
11_02_0012 - 7346282-7347136,7347234-7347593 33 0.18
04_04_0620 + 26656072-26656417,26656585-26657396 33 0.18
11_02_0011 - 7337618-7338496,7338596-7338991 32 0.24
11_01_0771 + 6453130-6454488 31 0.42
01_05_0251 + 19952882-19955459,19956209-19956245,19956370-199565... 28 5.1
05_04_0043 + 17450999-17451181,17451353-17451416,17451642-174517... 27 6.8
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 27 8.9
>01_01_1152 + 9170628-9171899
Length = 423
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +3
Query: 294 NIAFSPLGYSAILAILAEGAKGETXEQLYNALHLPQDPALTRKTYQYIMERLKNV 458
N SPL + A LA++A+GA+GET +L L P L R ++ RL+++
Sbjct: 60 NFIVSPLSFHAALALVADGARGETQRELLGFLGSPSLAELHRSPTTRLVARLRHL 114
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 36.3 bits (80), Expect = 0.015
Identities = 18/33 (54%), Positives = 20/33 (60%)
Frame = +3
Query: 279 IDDXENIAFSPLGYSAILAILAEGAKGETXEQL 377
I + N FSPLG A LA+LA G GET QL
Sbjct: 16 ITEQSNFMFSPLGLRAGLALLATGTDGETLRQL 48
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 35.9 bits (79), Expect = 0.019
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 294 NIAFSPLGYSAILAILAEGAKGETXEQLYNALHLP 398
N+AFSPL L+++A GA G T +QL + L +P
Sbjct: 45 NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVP 79
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 35.5 bits (78), Expect = 0.026
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +3
Query: 294 NIAFSPLGYSAILAILAEGAKGETXEQLYNALHLP 398
N+AFSPL L+++A GA G T +QL +AL P
Sbjct: 36 NVAFSPLSLHVALSLVAAGAGGATRDQLASALGGP 70
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 35.5 bits (78), Expect = 0.026
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +3
Query: 291 ENIAFSPLGYSAILAILAEGAKGETXEQLYNALHLPQDPA 410
+N+A SPL A LA+L GA+GET +Q+ L PA
Sbjct: 32 KNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPA 71
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 32.7 bits (71), Expect = 0.18
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +3
Query: 294 NIAFSPLGYSAILAILAEGAKGETXEQL 377
N+ FSP+ A LA++A GA+G T ++L
Sbjct: 32 NVVFSPVSLYAALALVASGARGTTLDEL 59
>04_04_0620 + 26656072-26656417,26656585-26657396
Length = 385
Score = 32.7 bits (71), Expect = 0.18
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 279 IDDXENIAFSPLGYSAILAILAEGAKGETXEQL 377
I + N FSP+ A LA+LA GA GET Q+
Sbjct: 16 ITEQSNFIFSPMCLRAGLALLATGADGETLRQM 48
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 32.3 bits (70), Expect = 0.24
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 279 IDDXENIAFSPLGYSAILAILAEGAKGETXEQL 377
+ +N+ FSP A LA++A GA+G T ++L
Sbjct: 27 VSSNKNLVFSPASLYAALALVAAGARGTTLDEL 59
>11_01_0771 + 6453130-6454488
Length = 452
Score = 31.5 bits (68), Expect = 0.42
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 273 GYIDDXENIAFSPLGYSAILAILAEGAKGETXEQLYNAL 389
G N+AFSPL A L++ A GA G T +++ L
Sbjct: 31 GAASPGRNLAFSPLSVHAALSLAAAGAAGGTLDEILAVL 69
>01_05_0251 +
19952882-19955459,19956209-19956245,19956370-19956586,
19957063-19957221,19957397-19957516,19957609-19957719
Length = 1073
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 422 FSCQSWVLGQMKCIIQLFXGLPFRTFG 342
FS ++ + C+I L+ GLPF ++G
Sbjct: 887 FSAMPYIYSLLNCLICLWYGLPFVSYG 913
>05_04_0043 +
17450999-17451181,17451353-17451416,17451642-17451700,
17452331-17452406,17452469-17452597,17453524-17453611,
17453711-17453966,17454308-17454423,17454569-17454789,
17454977-17455005,17455167-17455273,17455778-17456015
Length = 521
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +3
Query: 276 YIDDXEN-IAFSPLGYSAILAILAEGAKGETXEQLYNALHLPQDPALTRKTYQYIMERLK 452
YI D N P YSA +A ++ +T + LP+DP + +Y+ + +
Sbjct: 373 YISDASNGETVGPRDYSADMAATFRISRNDTPSGQFVPTRLPRDPKGLQCMLEYLRDTYQ 432
Query: 453 NVNTY 467
+ Y
Sbjct: 433 GIPVY 437
>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 363 TXEQLYNALHLPQDPALTRKTYQYIMERL 449
T QLY AL + ++ Y+YIMER+
Sbjct: 3283 TTNQLYTALKTKLTNHVEKQVYRYIMERI 3311
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,013,111
Number of Sequences: 37544
Number of extensions: 240547
Number of successful extensions: 493
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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