Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31722
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      31   0.56 
SB_45826| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)            29   2.3  
SB_29889| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_49215| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_12550| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 282 DDXENIAFSPLGYSAILAILAEGAKGETXEQLYNALHLPQD 404
           D   N+ +SP      LA+   GA+G T  Q+    H P D
Sbjct: 25  DGQTNLFYSPASIVVALAMTYLGARGNTATQMTKTFHFPTD 65


>SB_45826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 378 YNALHLPQDPALTRKTYQYIMERLKNV 458
           Y+  H+ QD ALT + Y Y M+++K V
Sbjct: 65  YDIKHVKQDLALTTRLYDYEMKQVKQV 91


>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
          Length = 1774

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 64  LIRNIKVASIPALXGKKEDSKE-KCANCLWLC 156
           L+    +   PAL G +++ KE +  NC W+C
Sbjct: 179 LVETADIDKAPALEGVEDEEKEERDGNCCWMC 210


>SB_29889| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 386 TSSAPRPSFDKKNIPIHHGETXKCKHLRIQST 481
           + S P+PS     +P+H G     +H ++Q+T
Sbjct: 38  SESVPKPSLAGSRVPLHTGMVDIRQHAQVQTT 69


>SB_49215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
 Frame = +3

Query: 219 DTSFIGDASSELSTAILQGYIDDXENIAFSPLGYSAILAILAEGAKGETXEQLYN--ALH 392
           D     ++ +EL T +    IDD E      L   A   I+  GAKG       N   LH
Sbjct: 233 DVFCANESEAELLTGLPVKSIDDAEKAVVMLLERGAGRVIITLGAKGSVIGSQQNPMPLH 292

Query: 393 LPQDPA 410
           +P  P+
Sbjct: 293 IPVTPS 298


>SB_12550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 850

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 228 FIGDASSELSTAILQGYIDDXENIAF-SPLGYSAIL 332
           FIGD   E      QGYID  E+ AF  P G+ A +
Sbjct: 591 FIGDEQGEYMMYNGQGYIDPREHPAFMGPDGHPAYM 626


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,256,005
Number of Sequences: 59808
Number of extensions: 284439
Number of successful extensions: 516
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)