Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31722
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   4.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   5.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   5.7  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   5.7  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   7.5  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   7.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   10.0 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   10.0 

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +3

Query: 453 NVNTYAYNQPELKNFXYVYKN 515
           N N Y YN     N+  +Y N
Sbjct: 100 NYNNYNYNNNNYNNYKKLYYN 120


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 460 FTFXSLSMMYWYVFL 416
           F+F  L+++YW  FL
Sbjct: 369 FSFLILNVVYWSTFL 383



 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 241 LPVNYLQLYYRVTLMTXKTSRFLLSDTLLF 330
           +P +YL LY+  TL+       +LS  + F
Sbjct: 107 IPNHYLWLYHDKTLLYMSKLTLVLSCAMKF 136


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 392 SAPRPSFDKKNIPIHHGE 445
           S P+   DK+++  HHG+
Sbjct: 369 SRPQYQIDKRSMGSHHGQ 386


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +2

Query: 308 SSRILCYFSHLSRRCERGDXRT 373
           ++ I C F+ +  +C+R + +T
Sbjct: 365 TAHIACKFADIKEKCDRRNGKT 386


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = +2

Query: 308 SSRILCYFSHLSRRCERGDXRT 373
           ++ I C F+ +  +C+R   +T
Sbjct: 365 TAHIACKFAEIKEKCDRRTGKT 386


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = +2

Query: 308 SSRILCYFSHLSRRCERGDXRT 373
           ++ I C F+ +  +C+R   +T
Sbjct: 76  TAHIACKFAEIKEKCDRRTGKT 97


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -2

Query: 242 SISNKAGVSGLVGTSLANPSCXDKGHC*AHNHK 144
           S+S +AG+  +    L +P       C    HK
Sbjct: 454 SVSGEAGIEEVKSPVLRSPPAFSHSRCPPEIHK 486


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -2

Query: 242 SISNKAGVSGLVGTSLANPSCXDKGHC*AHNHK 144
           S+S +AG+  +    L +P       C    HK
Sbjct: 454 SVSGEAGIEEVKSPVLRSPPAFSHSRCPPEIHK 486


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,073
Number of Sequences: 438
Number of extensions: 2393
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)