Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31720
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37070| Best HMM Match : Vicilin_N (HMM E-Value=4.8)                 45   3e-05

>SB_37070| Best HMM Match : Vicilin_N (HMM E-Value=4.8)
          Length = 319

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 21/32 (65%), Positives = 24/32 (75%)
 Frame = +1

Query: 379 YFSEKXMMGRNPLLYEQLXGQSLTDEEIKERD 474
           +FSE+ M  RNPLLYEQ  GQ LT+EE  ERD
Sbjct: 126 FFSEEEMRKRNPLLYEQYIGQYLTEEEKLERD 157



 Score = 36.7 bits (81), Expect = 0.011
 Identities = 18/46 (39%), Positives = 27/46 (58%)
 Frame = +3

Query: 141 KLXMALEIYKRSPVEFLMQFGKYLAPXHIKYFENISSSKDQTFRNY 278
           K+ +  EI K +P  FLM+FG+ L    ++YFE++   K  T  NY
Sbjct: 44  KIKILEEIKKTNPASFLMRFGQSLVTKDLEYFESL--YKQNTLTNY 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,295,598
Number of Sequences: 59808
Number of extensions: 147886
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)