Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31720
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16155.1 68417.m02451 dihydrolipoamide dehydrogenase 2, plast...    28   3.2  
At3g24880.1 68416.m03120 expressed protein                             27   7.5  
At3g24870.1 68416.m03119 expressed protein                             27   7.5  

>At4g16155.1 68417.m02451 dihydrolipoamide dehydrogenase 2,
           plastidic / lipoamide dehydrogenase 2 (PTLPD2) identical
           to plastidic lipoamide dehydrogenase from Arabidopsis
           thaliana [gi:7159284]
          Length = 567

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 180 VEFLMQFGKYLAPXHIKYFENISSSKD 260
           V+ L  FG  L P  +KY +NI + KD
Sbjct: 190 VDILTGFGAVLGPQKVKYGDNIITGKD 216


>At3g24880.1 68416.m03120 expressed protein
          Length = 1957

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -2

Query: 173  PFINFKGHXQFXHMSSPVVHXHGNS*RXYLQLP 75
            P   + GH    H  SP  H  GNS   +LQ P
Sbjct: 1471 PVQAYPGHLSQQHQMSPQSHVLGNSHHPHLQSP 1503


>At3g24870.1 68416.m03119 expressed protein
          Length = 1841

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -2

Query: 173  PFINFKGHXQFXHMSSPVVHXHGNS*RXYLQLP 75
            P   + GH    H  SP  H  GNS   +LQ P
Sbjct: 1357 PVQAYPGHLSQQHQMSPQSHVLGNSHHPHLQSP 1389


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,392,231
Number of Sequences: 28952
Number of extensions: 108791
Number of successful extensions: 154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)