Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31718
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.1  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   3.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.5  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = +1

Query: 166 DLQRQLSKANAEAQLWRSKYESEGVARSEELEEAXRKLQARLAEAEETIESLNQKVXA 339
           D  R L  A  +  +       +   +S++LEE+ RKL   +   +E +  +  K  A
Sbjct: 347 DFSRDLMLAGTQQSVELKLALDQEQLKSKKLEESMRKLDEEMKRTDELLYQMIPKQVA 404


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +3

Query: 402 CYCYCQRC 425
           CYC C++C
Sbjct: 2   CYCTCEKC 9


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 6   KXQGVAHYTARRHQEARRRGS 68
           K Q   HYT+ +H     RG+
Sbjct: 116 KNQNNNHYTSHQHLRTHLRGT 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.306    0.124    0.315 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,835
Number of Sequences: 438
Number of extensions: 1862
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.1 bits)