Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31717
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ...    25   2.6  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   3.4  
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    24   6.0  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    24   7.9  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    24   7.9  

>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 159 LHQFIPLDLALQKFILQTLEGELSQTGIFFDDQLDEREI*GYFRRSAIHSRRDHGQGVE 335
           L  F+P D    +F     E + S  G  FDD L  R++  YF    + +    G+G++
Sbjct: 220 LCSFVPKDWVRDEFFDTLKEKKKSCKGFSFDDLL-RRDLKQYFPDGIVVNYASVGKGLD 277


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 204 LQTLEGELSQTGIFFDDQLDERE 272
           ++TLE ELSQ G+   +Q+ + +
Sbjct: 442 VRTLENELSQAGVNLQEQIHQND 464


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 6/27 (22%), Positives = 19/27 (70%)
 Frame = +3

Query: 147 RPVILHQFIPLDLALQKFILQTLEGEL 227
           RP+ + +F+P  + +   ++++L+G++
Sbjct: 174 RPLYVEKFVPFSMEIAVMVVRSLDGKV 200


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 13/58 (22%), Positives = 27/58 (46%)
 Frame = +3

Query: 165 QFIPLDLALQKFILQTLEGELSQTGIFFDDQLDEREI*GYFRRSAIHSRRDHGQGVEQ 338
           +F P+D    +   QT++ + +  GI+   Q   RE      R ++   ++H + + Q
Sbjct: 624 KFAPIDSDSVEQFAQTIDWQQTPLGIYVVTQRQTREEQRKLIRESVQQDQEHKEQMRQ 681


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 8/23 (34%), Positives = 19/23 (82%), Gaps = 2/23 (8%)
 Frame = +1

Query: 256 NLTKEKFEVI--LDVQQFTPDEI 318
           ++ KEK E++  LD+++++P+E+
Sbjct: 478 SIEKEKVEIVPFLDIRKYSPNEV 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,266,926
Number of Sequences: 5004
Number of extensions: 21856
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)