Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31717
         (352 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)                 30   0.61 
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)                 29   0.80 
SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_49842| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_58214| Best HMM Match : DAO (HMM E-Value=0.00017)                   27   5.7  
SB_16606| Best HMM Match : 7tm_1 (HMM E-Value=0.0022)                  26   7.5  
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)                   26   9.9  
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)                       26   9.9  
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  

>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
          Length = 259

 Score = 29.9 bits (64), Expect = 0.61
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 217 RASLARQESSSTINLTKEKFEVILDVQQFTPDEITVK 327
           +A  A +E+ S       KF + LDV  F P+E+ VK
Sbjct: 9   KAPPATKENQSAATKDDTKFTLALDVSDFKPEEVDVK 45


>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
          Length = 185

 Score = 29.5 bits (63), Expect = 0.80
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 268 EKFEVI-LDVQQFTPDEITVKASNNTV 345
           +KF++  LDV++F P+EIT K  N  +
Sbjct: 4   DKFQIATLDVREFKPEEITCKVENGKI 30



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 229 ARQESSSTINLTKEKFEVILDVQQFTPDEITVK 327
           A  E+ +       KF + LDV  F P+E+ VK
Sbjct: 85  ATTENKAPATKDDTKFTLALDVSDFKPEEVDVK 117


>SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +1

Query: 223 SLARQESSSTINLTKEKFEVILDVQQFTPDEITVKASNNTV 345
           S A+Q +S   +LT  K EV + V Q TP E   K SNN +
Sbjct: 396 SNAQQATSKEQHLTS-KGEVQVPVGQITPSEQASKTSNNAL 435


>SB_49842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 230 AKLALQGLKYEFLKSEVEGNELMEDNRSSF 141
           AK +L  + YE+  S  E  E + +NR +F
Sbjct: 26  AKDSLSKIAYEYFSSGAENEETLRENREAF 55


>SB_58214| Best HMM Match : DAO (HMM E-Value=0.00017)
          Length = 280

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = +1

Query: 190 FRNSYFRPW--RASLARQESSSTINLTKEKFEVIL 288
           FR  YFR W  R S+ R  SSS+ N++KE F+V++
Sbjct: 75  FRRRYFRHWSIRKSM-RCFSSSSRNVSKE-FDVVI 107


>SB_16606| Best HMM Match : 7tm_1 (HMM E-Value=0.0022)
          Length = 313

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 164 MEDNRSSFFRPMPKCWSSSL 105
           M+D R +FFR + KCW  S+
Sbjct: 224 MKDFRQTFFRWLIKCWRRSV 243


>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
          Length = 695

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 265 KEKFEVI-LDVQQFTPDEITVKASNNTV 345
           + K E+  LDV+++ P+EI+ K  N  V
Sbjct: 5   ENKLEIAKLDVREYRPEEISFKVENGVV 32


>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
          Length = 424

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 226 LARQESSSTINLTKEKFEVI-LDVQQFTPDEITVKASNNTV 345
           L  + S   + L  ++ E+  LDV+++ P+EI+ K  N  V
Sbjct: 225 LDEEVSCRLVYLQLDELEIAKLDVREYRPEEISFKVENGFV 265


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 269  SFVKLIVEEDSCLAKLALQGLKYEFLKSEVE 177
            S VK+ V  D  L+    + LKY+ L+ E+E
Sbjct: 1109 SVVKVFVASDPLLSDFKTEILKYQTLEQEIE 1139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,494,294
Number of Sequences: 59808
Number of extensions: 161807
Number of successful extensions: 394
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)